Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47580 667 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 666 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 654 / 0 EFR EF-TU receptor (.1) AT5G46330 437 / 7e-136 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT3G47570 430 / 6e-135 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 413 / 1e-128 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 378 / 8e-115 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 376 / 8e-114 Leucine-rich repeat protein kinase family protein (.1) AT5G65700 373 / 1e-113 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G65710 372 / 3e-113 HSL2 HAESA-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030634 [exp] 1329 / 0 AT3G47570 755 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 1231 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 1184 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 1151 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 1149 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 1140 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014500 [exp] 1137 / 0 AT3G47570 663 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 1129 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 1120 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007866 [exp] 882 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 857 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 856 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 850 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 840 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 831 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 828 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 827 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 820 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 812 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030854 pacid=23155286 polypeptide=Lus10030854 locus=Lus10030854.g ID=Lus10030854.BGIv1.0 annot-version=v1.0 ATGATTTCTGTCGATCAACTGGGGGTTCTGAGCTCGTGGAACGATTCTACCCACTTCTGTGACTGGTATGGTGTGTGTTGTTCCAAAAGACATCATGGTA GAGTTACGGATTTAAATTTGCCATCTCTAGGGCTTTCTGGCTCTATCTCACCGCACATTGGCAATCTCAGCTTCCTCAGGGTGGTAGCTCTATACAACAA CAGTTTCACAGGTGGAATCCCTCCTGAAATAGGCCGCCTTCGCAGATTGCAACAACTAAAGCTTTACAATAACTCGCTCGGAGGTGAGATCCCATCAAAC ATCTCTGCATGCTCTGCTCTTATCGGAATCAATCTATCATATAACAAGCTAGTGGGGGAACTACCATGGCAGTTTGGTCTATTGCACAAACTCCAATTCT TCAGGGTGAGATCAAACAACCTAAGAAGCAACATCCCAACCTCTTATGGCAATCTGTCATCTCTTCAGGTATTCAACGCAGGGACAAACAATTTGAGTGG AAGAGTTCCTGATGCTCTAGGCCAATTGAAGAGTCTTCAAGTTCTGTTCCTGAATTTAAACAAGTTGAGCGGTGAAATCCCTACTTCGGTTTTTAATTTG TCTTCTCTGACCGAACTGCGGCTTGGAAGGAACCAACTCCACGGTAGTCTCCCTTGGAACTTAGGAATATCACTTCCTAATCTCGAGATAATCGATTTCG CTTTTAACCAGTTTACTGGTAAAGTTCCGCCTTCATTATCCAATGCATCCAATTTGGTTGAGCTCCAACTCCAAGTTAACAGTTTTACAGGAAGCATGCC TAGTATAGCAAGCTCCAACAAGCTCACACGTTTTTCGATCCATAGAAACAATCTGGGAACTGGCAATGTCACAGATCTCAGCTTCCTCTCTTCTTTGACC AATGCCACAGGTTTGGAATTCCTGGTTATGGGCGCGAATAATTTCGGAGGTAGCTTACCGCAACATATTGGCAATTTGTCAACTAACCTGAAAGGTCTAG TCTTTGACCAAAACCAAATATCAGGAAACATTCCAAACGAGATACAAAATCTTGTCAACTTGGAAGGGATATGGGCATTCCACAACAAATTGTCAGGTAC AATCCCATCAAGCATCGGAAGCCTATACTCTTTGCAACGATTGTATTTATTCAACAACAATTTGTCAGGATATATTCCTCTGTCTATTGGAAACTTGACG AGATTGATAAACCTGGATATAAGCAATAACCATCTGCTTGGAGAAATTCCTGCTTCCATTCAGAATTGTCAGAGATTATTAGAATTGCAACTCTCTAGCA ACAATCTTAGTGGTCTCATCCCTCCTCAAGTCATTGGTATTGTTTCATTGTCAATTGTTCTGGACTTGTCTACTAATCGGCTCACCGGTTCGATTCCCAC CGAGGTTGGAACTCTGAGAAACTTGGAAGCATTGAGTATATCTCATAACATGCTGACAGGCATTATTCCAAGTAGTCTAGGTAGTTGCATCAGCCTAGAG TCTTTGTTCTTGCAAGGAAATCTCCTACAAGGTATAATTCCTTCTTCTAGTTCATTGAAGGGCATTCAACAACTGGATCTCTCTGCCAATAACTTATCTG GTCAAATACCAAAAATTTTGGAGCTTATGAATATCTCGCAATTTTTAAATCTATCGTTCAACCATTTCGAGGGTGAAGTTCCTAGTGGAGGAGCTTTCAA AAACGCCAGCATCATTTCGGTCAAAGGAAACAGCAAGATATGTGGGGGGATCACTGACCTTAAACTTCCACCTTGCAATGATAACTTCGGACACTCGAAA AATGGGTTGTCAAAAAAAGCTATTGTGGTAACTGATGAGAATCAACAGTTATTACAACTATCATACCAACAACTCTATACAGCTACAGATGGCTTCTCCT CGGTAAATCTGATAGGCGCTGGGAGCTTCGGCTCCGTGTTCAAGGGAGTACTTCATAAAGACGAAACCAGTACTACTATTGCAGTGAAGGTATTCGATCT TCAACACCGTGGAGCTTCCAAGAGTTTTATGGCAGAGTGTGAAGCGTTGAAGAACGTTAGACACAGAAATCTTGCGAGGATAGTAACGGTGTGTTCAAGT GTTGATCGTCAAGGGAATGATTTCAAGGCCCTCATCTATGAGTTTTTTGCCAATGGAAGCTTGGAAGACTGGCTACATCACCAAATTGAAAGAATAGATG TGTCTACAAGGAACCTGAATTTTATTGAGAGGGTGAACATTGCCATTGATGTAGCTTCCGCGATGGAGTATCTTCACGGTCAATGTGAAACTCCTATTGT TCATTGTGATTTTAAGCCTAGCAACGTACTTCTAGACGAAGATATGATCGCTCACGTGGGTGATTTTGGGCTGGCGAGATTTATTTTGGAAATTGCAAAT CCCACTTCGAGTTCTATTGGCATCAAAGGAACTGTCGGCTATACACCACCAGAATATGGAATGGGAAACCAAGTCTCAATACAAGGAGATGTCTACAGTT ACGGTATTCTCCTACTTGAATTATTTACCGAAAAGAGGCCCACTGATGAGACTTTCACACAAGGATTGGACCTTCACAACATGGTCACAAATGCTTTGTC GAATCAACAGATTATGAAAGTTGTGGATCCAACTCTACTCAATGAACTACTTCATCAAAGGCCACGAACCTATCACAACCACAACAATGAAACGAGAAAG GGCCTGAATGAGCTATTGAGTTCCATTCTCGAAATTGGTGTTGCTTGTTCTTCGAACATCCCAGAAGACAGAATTAGTATGAACGAGGTTGTATCAAGGT TTACCGATATCCAAGAGTTTTGTCCGGCTGGAAGAAGGTGA
AA sequence Show only first row Show all	>Lus10030854 pacid=23155286 polypeptide=Lus10030854 locus=Lus10030854.g ID=Lus10030854.BGIv1.0 annot-version=v1.0 MISVDQLGVLSSWNDSTHFCDWYGVCCSKRHHGRVTDLNLPSLGLSGSISPHIGNLSFLRVVALYNNSFTGGIPPEIGRLRRLQQLKLYNNSLGGEIPSN ISACSALIGINLSYNKLVGELPWQFGLLHKLQFFRVRSNNLRSNIPTSYGNLSSLQVFNAGTNNLSGRVPDALGQLKSLQVLFLNLNKLSGEIPTSVFNL SSLTELRLGRNQLHGSLPWNLGISLPNLEIIDFAFNQFTGKVPPSLSNASNLVELQLQVNSFTGSMPSIASSNKLTRFSIHRNNLGTGNVTDLSFLSSLT NATGLEFLVMGANNFGGSLPQHIGNLSTNLKGLVFDQNQISGNIPNEIQNLVNLEGIWAFHNKLSGTIPSSIGSLYSLQRLYLFNNNLSGYIPLSIGNLT RLINLDISNNHLLGEIPASIQNCQRLLELQLSSNNLSGLIPPQVIGIVSLSIVLDLSTNRLTGSIPTEVGTLRNLEALSISHNMLTGIIPSSLGSCISLE SLFLQGNLLQGIIPSSSSLKGIQQLDLSANNLSGQIPKILELMNISQFLNLSFNHFEGEVPSGGAFKNASIISVKGNSKICGGITDLKLPPCNDNFGHSK NGLSKKAIVVTDENQQLLQLSYQQLYTATDGFSSVNLIGAGSFGSVFKGVLHKDETSTTIAVKVFDLQHRGASKSFMAECEALKNVRHRNLARIVTVCSS VDRQGNDFKALIYEFFANGSLEDWLHHQIERIDVSTRNLNFIERVNIAIDVASAMEYLHGQCETPIVHCDFKPSNVLLDEDMIAHVGDFGLARFILEIAN PTSSSIGIKGTVGYTPPEYGMGNQVSIQGDVYSYGILLLELFTEKRPTDETFTQGLDLHNMVTNALSNQQIMKVVDPTLLNELLHQRPRTYHNHNNETRK GLNELLSSILEIGVACSSNIPEDRISMNEVVSRFTDIQEFCPAGRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47110			Leucine-rich repeat protein ki...		Lus10030854 [exp]	0	1
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10019858 [exp]	3.0	0.6503
					Lus10037542 [exp]	4.6	0.6221
AT3G03341			unknown protein		Lus10009121 [exp]	6.3	0.6189
AT3G07600			Heavy metal transport/detoxifi...		Lus10016063 [exp]	8.5	0.6794
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10015573 [exp]	12.3	0.6558
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10004365 [exp]	15.3	0.6320
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10029839 [exp]	16.6	0.6439
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10000072 [exp]	25.6	0.6219
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10030168 [exp]	42.7	0.5683
					Lus10013609 [exp]	53.4	0.5851

Compare expression of checked genes

Lus10030854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.