Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 766 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 714 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 706 / 0 EFR EF-TU receptor (.1) AT3G47580 697 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 692 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 464 / 1e-147 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 444 / 4e-138 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 422 / 1e-131 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G48940 419 / 2e-129 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G49670 413 / 3e-128 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030856 [exp] 1468 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 1294 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 1246 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 1236 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030854 [exp] 1235 / 0 AT3G47110 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 1229 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 1223 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030634 [exp] 1218 / 0 AT3G47570 755 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 1199 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007866 [exp] 940 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 939 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 930 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 915 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 905 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 904 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 890 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 887 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 876 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 872 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030855 pacid=23155264 polypeptide=Lus10030855 locus=Lus10030855.g ID=Lus10030855.BGIv1.0 annot-version=v1.0 ATGACAGATCGTATGGCTTTGCTACAATTTAAGTCCATGATCTCTGCTGATCCTTTCAGGGCTCTGAGCTCGTGGAACGATTCGGCCCACTTCTGCGATT GGTATGGCGTGTCTTGTTCCAAAAGACATTATGGCAGAGTCACTATCTTACAGTTGCCATCTCAAGCACTCTCTGGCTCTATCTCGCCACACGTCGGCAA CCTCAGCTTTTTGAAGGTGTTGAGTCTCTACAACAACAGCTTCACTGGAAGAATCCCTCCTGAAATTGGCCGTCTTGGTAGATTGCAGGAGCTAGTGCTT TACAACAACTCGCTTGACGGTGAAATCCCATCCAACATCTCAGGTTTATCTTCCCTTACCACATTTGATGTATTCAAAAATAAGCTAGTGGGACGTCTAC CATGGCAGTTTGGCCTACTGAACAAGCTCCAATATTTGGCCATCAGCTTAAACAATCTAACCGGAAGCATCCCTCACTCTTTTAGTAACCTGTCATCTCT TGAGTCATTTAATGCAGCTACCAACCAACTGAGCGGGAGAATTCCAGATGTTTTAGGCCATCTGAAGAGTCTTGACTATCTAGCTCTGGATTCCAACTAC TTCGAGGGTGAAATGCCTGCTTCTATTTTCAACCTCTCTAATCTCACACAACTGTGGTTTGGATATAACCAACTCTATGGAAATCTTCCTTGGAGCATAG GAATATCACTTCCGAATATCGAGATTTTATGTGTGGATAATAACCAGTTTACTGGAAGCATTCCTTCTTCCTTATCCAATGCATCCAATCTCGTTATGTT ACAATTCCAGAAAAACAGCTTTACAGGGAGCATGCCGAGTATGGCAAGCTCTAACAAGCTTTCGCGCCTTTTGATCCACAGCAACTACCTGGGAAGTGTT GGGCTAGGAGACGATTTGAGTTTCTTCTCTTCTTTGACTAATAGCACACGTTTGGAACACGTTGGAATTGACGTAAATGATTTTGGAGGCAGCTTACCAC GCTGTATTGGTAACTTGTCGATCACGATGAAGTTTCTATCGTTCACTAACAACAGCATATCGGGAAACATTCCGAGCGAGATACAGAACCTTGTCAACTT GGAGCTGCTTTGGGCATATAACAATGATCTTTCAGGTACAATTCCACCGGGCATCGGGAAACTCCACTCTCTACAGCAGTTGCATTTGGTCAACAACAAC CTTTCTGGGCATATTCCATTTTCTATTGGAAACTTGACAAAATTAATTGGGCTGGATATCAGTAGTAACCATCTGCAGGGAGAAATTCCAACTTCTATTG AACATTGTCAAAATTTGTTACTTTTGCGAATGTCTTTTAACAATCTCAGTGGTGTCATCCCCCCGCAACTCATGAGTCTTACTTCCTTGTCAAGGGGATT GGACTTGTCTGGAAATCAATTCACAGGTGCAATTCCCGCCGAGGTGGGAAATTTGAAGAACTTGGGGCATTTGGATCTATCTTATAACATGTTGTCAGGG AGCATTCCAAGCAGTTTGGGTAGTTGTGTGAGCCTAGAATTTCTATACTTGCAAGGCAATTTCCTACAAGGTATCATTCCTTCTTCTTTGAGTTCATTAA GAGGTATTCAACTACTGGATCTATCGGCCAACAACTTATCCGGTCAAATTCCGAAATTTCTCGAGCACATGAATATCTCACAATTCTTGAATATCTCATA CAACAATTTTGAGGGTGAAGTGCCTACTAAAGGGGTATTCGGAAACATTATTACCATTTCGCTCATCGGAAATAGCAAGCTATGTGGGGGCTTGGCTGAT CTTCAACTTCAACCTTGTAATATCCTAAGACACCAGGAAAAAGTATTGAGCCACAAGTGGAGGATTGTTATATCAACAATCACTAGTCTACTCTTTCTTA TCTTCATGTGTTCCATCTTGTTTATCTTTTGGATTAAAAGGATAGGAAAACAAGATGCTCTCATAGTGGATGATAAAAAATTATTACAAGTGTCTTACCA AAGGCTCTATGAAGCTACAAATGGTTTTTCGATGGCAAATCTAATTGGCGGAGGTAGTTTTGGATCTGTATACAAGGGAGCCCTTACTGAAGATGGCATT AGTACAACTAATATTGCCGTGAAGGTGTTCAACCTTCATCGTCGGGGAGCTTTCAAGAGTTTTATGGGAGAATGTGAAGCTTTGAAGAACATCCGACACA AAAATCTTGTGAGGATAGTGACTGCGTGTTCAAGTGTCGATCATCAAGGAAATGATTTTAAGGCTCTCATCTACGAGTTATTGGTTAATGGAAGTCTGGA AGATTGGTTGCACTGGTCAGTTGAAAGAATGGATGAGCCTGCTAAATTCTTGAATTTTGTTCAGAGGGTAAATATATCAATAGATGTAGCTTTTGCTATG GACTATCTTCACAACCATTGTGAAATTCCGATTGCTCATTGCGATCTCAAACCTAGCAACGTACTTCTAGATGAGGATATGGTCGCTCACGTGGGTGATT TCGGGTTGGCGAAATTTATTTTGGAAATTACAAATCCAGCTTCAAGTTCTATTGGCGTAAAGGGCACGATCGGCTATGCACCACCAGAATATGGGATGGG AAATCAAGTTTCAATTCAAGGAGATGTATACAGTTACGGTATTCTCCTATTTGAATTATTTACTGGAAAGAGACCCACTGATGAGACTTTCATCCAAGGT TTAGACCTTCACAACATGGTCACAAATGCTTTGTCTAATCAACAAACTATGGAAGTTGTGGATCCAATTTTACTCAATGAACTACTTCAACAAAGGCCAC ACACCTATCGCAATCACAACGAGGAAACGAAAAAGGGTCCAGAGGAGCTACTGAGTTCCATACTCGAAATTGGTCTCGCTTGTTCTTCCAACATCCCAGA AGACAGAGTTAACATGAGCGAAGTTGTATCGAGGCTAAGCAGTATCAGAAAGCTCTGTCCGACCGAAATGAGGTGA
AA sequence Show only first row Show all	>Lus10030855 pacid=23155264 polypeptide=Lus10030855 locus=Lus10030855.g ID=Lus10030855.BGIv1.0 annot-version=v1.0 MTDRMALLQFKSMISADPFRALSSWNDSAHFCDWYGVSCSKRHYGRVTILQLPSQALSGSISPHVGNLSFLKVLSLYNNSFTGRIPPEIGRLGRLQELVL YNNSLDGEIPSNISGLSSLTTFDVFKNKLVGRLPWQFGLLNKLQYLAISLNNLTGSIPHSFSNLSSLESFNAATNQLSGRIPDVLGHLKSLDYLALDSNY FEGEMPASIFNLSNLTQLWFGYNQLYGNLPWSIGISLPNIEILCVDNNQFTGSIPSSLSNASNLVMLQFQKNSFTGSMPSMASSNKLSRLLIHSNYLGSV GLGDDLSFFSSLTNSTRLEHVGIDVNDFGGSLPRCIGNLSITMKFLSFTNNSISGNIPSEIQNLVNLELLWAYNNDLSGTIPPGIGKLHSLQQLHLVNNN LSGHIPFSIGNLTKLIGLDISSNHLQGEIPTSIEHCQNLLLLRMSFNNLSGVIPPQLMSLTSLSRGLDLSGNQFTGAIPAEVGNLKNLGHLDLSYNMLSG SIPSSLGSCVSLEFLYLQGNFLQGIIPSSLSSLRGIQLLDLSANNLSGQIPKFLEHMNISQFLNISYNNFEGEVPTKGVFGNIITISLIGNSKLCGGLAD LQLQPCNILRHQEKVLSHKWRIVISTITSLLFLIFMCSILFIFWIKRIGKQDALIVDDKKLLQVSYQRLYEATNGFSMANLIGGGSFGSVYKGALTEDGI STTNIAVKVFNLHRRGAFKSFMGECEALKNIRHKNLVRIVTACSSVDHQGNDFKALIYELLVNGSLEDWLHWSVERMDEPAKFLNFVQRVNISIDVAFAM DYLHNHCEIPIAHCDLKPSNVLLDEDMVAHVGDFGLAKFILEITNPASSSIGVKGTIGYAPPEYGMGNQVSIQGDVYSYGILLFELFTGKRPTDETFIQG LDLHNMVTNALSNQQTMEVVDPILLNELLQQRPHTYRNHNEETKKGPEELLSSILEIGLACSSNIPEDRVNMSEVVSRLSSIRKLCPTEMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10030855 [exp]	0	1
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10042787 [exp]	12.6	0.6723
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10005343 [exp]	21.0	0.6541
AT1G30040		ATGA2OX2	GIBBERELLIN 2-OXIDASE 2, gibbe...		Lus10023311 [exp]	23.2	0.6172
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Lus10014335 [exp]	42.0	0.6394
AT2G15780			Cupredoxin superfamily protein...		Lus10025269 [exp]	47.6	0.6034
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10006302 [exp]	51.2	0.5996
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029580 [exp]	58.6	0.5801
AT5G59350			unknown protein		Lus10005455 [exp]	67.3	0.5799
AT5G02930			F-box/RNI-like superfamily pro...		Lus10040452 [exp]	98.3	0.5471
AT1G30710			FAD-binding Berberine family p...		Lus10023369 [exp]	106.7	0.5215

Compare expression of checked genes

Lus10030855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.