Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 738 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 725 / 0 EFR EF-TU receptor (.1) AT3G47090 691 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 686 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 686 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 463 / 8e-147 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 438 / 1e-135 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 408 / 6e-125 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G28650 402 / 1e-123 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G20140 400 / 4e-121 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030855 [exp] 1468 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 1236 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 1228 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 1221 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030854 [exp] 1212 / 0 AT3G47110 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 1204 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 1204 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 1192 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030634 [exp] 1157 / 0 AT3G47570 755 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007866 [exp] 920 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 906 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 892 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 870 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 867 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 864 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 859 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 848 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 846 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 841 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030856 pacid=23155195 polypeptide=Lus10030856 locus=Lus10030856.g ID=Lus10030856.BGIv1.0 annot-version=v1.0 ATGAGTACTTCAGGAGGTTGGAGTGTAAACTTTTTCGGGGTGGCAACAGCACTTGTTCGGATGTTGTTTTATTGTTGTTGTGCTTCTTCCTCTTCCTCTG GGACTCTGCTGAGTAACGAGACAGATCGTGTGGCTTTGCTACACTTCAAGTCCATGATCTCTGCTAACCCTTTGACCGAGTTGAGCTCGTGGAATGATTC AACCAACTTCTGCAAGTGGTATGGCGTGTCTTGTTCCAAAAGACATTATGGCAGAGTCACGGCCTTAAACCTGCCATCTCAAGCACTCTCTGGCTCTATC TCGCCACACGTCGGCAACCTAAGCTTTTTGAAGGTGTTGAGTCTCTACAACAACAGCTTTACTGGAGGGATCCCTCCTGAAATCGGCCGTCTTGGCAGAT TGCAGAAGCTGGAGCTTAACAACAACTCGCTTGGCGGTGAGACCCCATCTAACATCTCAGTTTTATCTGAACTTACAAAATTTGATATGTCTAAAAATAT GATAGTGGGATGCGTACCGTGGCAGCTTGGCCTACTGAAAAAGCTACGATACTTGGACATAAGCTTAAACAATCTAACAGGAAGCATCCCTCACTCTTTT GGCAATTTGTCATCTCTTGAGGTGTTTAATGCAGCTTTCAACCAATTGAGTGGTAGAATTCCTGATGCTTTAGGCCATATGAAGAGTATTGACTATCTGG CTCTGGCTTTCAACTACTTCGAGGGCGAAATTCCTGCTTCTATTTTCAACCTCTCTACTCTCACACAATTGTGGTTTGGACATAACCTATTCAATGGAAC TCTTCCTTGGAACATAGGATTATCACTTCCGAATCTCGAGGATTTATATGTGGGTTATAACCAGTTTACAGCTGGTATTCCTTCTTCCTTATCCAATGCA TCCAATCTAGTTACACTGCAGCTCCAACAAAACAACCTTACAGGGAGCATGCCAAGTATGGCAAGGTCTAACAAGCTTTTGCGCTTTTTGATCCATCACA ACTTTCTGGGAAGTGGTGGGGAAGCTGATGATTTGAGTTTCCTCTCTTCTTTGAGTAATGCCACAAGTTTGGAAATTGTCCAAATCGGCTCTAATGATTT TGGAGGCAGCTTACCGCGCAGTATTGGTAACTTGTCGACCACCATGAAGTTTCTATCCATCCTTGACAACAGAATATCGGGAAGCATTCCGAGCGAGATA CTAAACCTTTTCAACTTGGACCAGTTTTGGGCAAATGACAATAATCTTTCAGGTATAATTCCACCCGGCATCGGGAAACTGCACTCTTTAGAGCGGTTGA ATTTGTACAACAACCACCTTTCTGGGAATATACCACTGTCTATTGGAAACTTGACAAAATTACTTGAGTTGGATATCAGTGGTAACAGTCTGCAGGGAGA AATTCCAGCTTCCATTGAGCATTGCCAAAATCTGTTATTTTTGCAAATGTCTTTTAACAATCTCAGTGGTGTCATGCCCCCGCAACTCCTGAGTCTTACT CCCTTGTCAATAGGATTGTGCTTGTCTGGAAATCGATTCACAGGTGTCATTCCCGCCGAGGTGGGAAATTTGAAAAACTTGGATTATTTGGATCTGTCTT ATAACATGTTATCAGGTAGCATACCAAGCAGTTTGGGTACTTGTGTCAGCCTAGAATCTTTATATTTGCAAGGCAATCTCCTACAAGGTATTCTTCCTTC TTCTTTGAGTTCATTAAAAGGTATTCAAGAGTTGGATCTTTCGGCCAATAATTTTTCGGGTCAAATTCCAATTTTTTTGGAACATATGAATATCTCGCGA CTTTTGAATCTCTCATATAACAATTTCAAAGGCGAAGTTCCAACGGAAGGAGTCTTCAAAAACAATAGCATTATTTCCGTAACGGGAAATAACAAATTAT GCGGGGGAACGGCTGAGCTTAAGCTTCCACCTTGTAATATCTCGAGACATAGAAACAAAACATTGAGCCATAAGTGGAGGATTGTCATATCAACAATCTC TAGTCTACTATTTCTTATCTTCATGGGTTCTATCTTTTTTATCTTCTGGATTAAAAAGATAAGAAAACAAAATAGTATGGCACCCGGAGATAATAAATTA TTACAAGTGTCTTACCAAAGGCTCTACAAAGCTACAAATGGTTTCTCTGTAGCAAATTTAATTGGTGGAGGCAGTTTTGGATCCGTATACAAAGGAGTCC TTATCGAAAATGGAACTAGTACTAATATTGCTGTGAAGGTCTTCAACCTTCACCGTTGTGGAGCTTCCAAGAGTTTTATGGGAGAATGTGAGGCTTTGAA GAATACCCGACACAAAAATCTTGTTAAGATAGTGACTGCATGTTCAAGTGTCGATCATCAAGGAAATGATTTTAAAGCTCTCATCTACGAGTTATTGGTT AACGGAAGCTTGGAAGATTGGTTGCATTGGCCGGATAAAAGATTAGATGTGTCTACCAAGAATCTGAATTTCCTTCAGAGGGTAAACATTTCAATAGATG TAGCTTCTGCTATAGATTATCTTCACAATCATTGTGAAACATCTATTGTTCATTGCGATCTTAAGCCTAGCAACGTGCTTCTAGACGAGGATATGGTAGC TCATGTGAGTGATTTTGGGTTGGCGAGATTTATTTCGGAAATTGCAAATCCCTCTTCAAGTTCTATTGGCATAAAAGGAACGATCGAATATGGAACGGGA AACCAAATCTCAATACAAGGGGATGTATACAGTTACGGTATACTTTTACTTGAATTATTTACTGGAAAGAGGCCTACTGATGAGACTTTCACCCAAAGTT TAAATCTACACAAAATTGTCACAAATGCTTTGTCGATTCAACGGAGTATGGAAGTTGTGGATCCAATTCTACTCAATGAACTTCATAAAAGGCCGCAGAA GGTCCACAACCACAACAGGGAAACGAGAAAGGGCCTGGAGGAGTTATTGTGTTCCATTCTCGAAATTGGTGTCGCTTGTTCTTCAGACAGTCCAGAAGAC AGAGTTAGCATGAACGAAGTTGTCTCGAGACTTATCGATATCAGAAAGCTTTGTCCTCCTGAAAGGAGGTGA
AA sequence Show only first row Show all	>Lus10030856 pacid=23155195 polypeptide=Lus10030856 locus=Lus10030856.g ID=Lus10030856.BGIv1.0 annot-version=v1.0 MSTSGGWSVNFFGVATALVRMLFYCCCASSSSSGTLLSNETDRVALLHFKSMISANPLTELSSWNDSTNFCKWYGVSCSKRHYGRVTALNLPSQALSGSI SPHVGNLSFLKVLSLYNNSFTGGIPPEIGRLGRLQKLELNNNSLGGETPSNISVLSELTKFDMSKNMIVGCVPWQLGLLKKLRYLDISLNNLTGSIPHSF GNLSSLEVFNAAFNQLSGRIPDALGHMKSIDYLALAFNYFEGEIPASIFNLSTLTQLWFGHNLFNGTLPWNIGLSLPNLEDLYVGYNQFTAGIPSSLSNA SNLVTLQLQQNNLTGSMPSMARSNKLLRFLIHHNFLGSGGEADDLSFLSSLSNATSLEIVQIGSNDFGGSLPRSIGNLSTTMKFLSILDNRISGSIPSEI LNLFNLDQFWANDNNLSGIIPPGIGKLHSLERLNLYNNHLSGNIPLSIGNLTKLLELDISGNSLQGEIPASIEHCQNLLFLQMSFNNLSGVMPPQLLSLT PLSIGLCLSGNRFTGVIPAEVGNLKNLDYLDLSYNMLSGSIPSSLGTCVSLESLYLQGNLLQGILPSSLSSLKGIQELDLSANNFSGQIPIFLEHMNISR LLNLSYNNFKGEVPTEGVFKNNSIISVTGNNKLCGGTAELKLPPCNISRHRNKTLSHKWRIVISTISSLLFLIFMGSIFFIFWIKKIRKQNSMAPGDNKL LQVSYQRLYKATNGFSVANLIGGGSFGSVYKGVLIENGTSTNIAVKVFNLHRCGASKSFMGECEALKNTRHKNLVKIVTACSSVDHQGNDFKALIYELLV NGSLEDWLHWPDKRLDVSTKNLNFLQRVNISIDVASAIDYLHNHCETSIVHCDLKPSNVLLDEDMVAHVSDFGLARFISEIANPSSSSIGIKGTIEYGTG NQISIQGDVYSYGILLLELFTGKRPTDETFTQSLNLHKIVTNALSIQRSMEVVDPILLNELHKRPQKVHNHNRETRKGLEELLCSILEIGVACSSDSPED RVSMNEVVSRLIDIRKLCPPERR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10030856 [exp]	0	1
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10008372 [exp]	3.5	0.9100
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008919 [exp]	4.9	0.9100
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021937 [exp]	5.7	0.7054
AT2G26490			Transducin/WD40 repeat-like su...		Lus10016289 [exp]	6.0	0.9100
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10017997 [exp]	6.9	0.9100
AT5G09360		LAC14	laccase 14 (.1)		Lus10036070 [exp]	7.7	0.9100
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021456 [exp]	8.5	0.9032
AT1G55790			Domain of unknown function (DU...		Lus10032900 [exp]	9.2	0.8933
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10042512 [exp]	9.8	0.8866
					Lus10014629 [exp]	10.8	0.8733

Compare expression of checked genes

Lus10030856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.