Plant FIBer expression Database

Lus10030859 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G23850 54 / 2e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030860
[exp]
147 / 8e-43 AT1G23850 157 / 4e-45 unknown protein
Lus10030630
[exp]
63 / 3e-11 AT3G47570 426 / 8e-137 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G262900
[exp]
51 / 2e-07 AT1G23840 103 / 2e-25 unknown protein
PFAM info
Representative CDS sequence
>Lus10030859 pacid=23155278 polypeptide=Lus10030859 locus=Lus10030859.g ID=Lus10030859.BGIv1.0 annot-version=v1.0
ATGGACAGTATCATGATCATGTTGAGTCGTCACAGGCCAGACTTCCTTGACATACTTAAGGAATCCCTCGTGTTCCCATTCAGCAGCATCAGGTTCATCA
TCTTCACATCCCTGTCTTCCTTCCCCTTTACCACCTTCCTCTTCTTCTTCAACCTCACCCTCCAACACTTCATAGAGCCCATGTTCCACCACCCTGATCA
GCTCCCCGGCATGACTCATTCTCCCCTACATCGTACCTTACCACCTCCTCCAGTTCATCAGCATCGCCACCTCCTCCAGCTCATCAGCATCGCCACCTCA
GTCGACTTGGCCACAAGGCTCTACGGCAGGGAGGAGCTTGGCATCAGCAGCCTGTCCGAATCCTTACGGAAACTCATCATCAAGGGTCCTCTGATCATGT
TCACGTATCATGTCCTGCTTTCTACATCCACACTCATTGGACTCCTGTGGATCATTACGAATTGCTTCTTTTTCATTGGATCCTTCTTTAGCCACGACAA
CTGCTACTACCACGAACACTATTACAATTGGTATGGTCTCAGCATCATGGTTCGATTGGTGGTGACCATGGCTCTCGGAGCAGGATTCATTGCCTTGCTG
GTGAAATACATGGAGTGGAGTGGCGGGTGGAACATGAGCGTGGTAGTAACCAATTTGAACAGAGTATGA
AA sequence
>Lus10030859 pacid=23155278 polypeptide=Lus10030859 locus=Lus10030859.g ID=Lus10030859.BGIv1.0 annot-version=v1.0
MDSIMIMLSRHRPDFLDILKESLVFPFSSIRFIIFTSLSSFPFTTFLFFFNLTLQHFIEPMFHHPDQLPGMTHSPLHRTLPPPPVHQHRHLLQLISIATS
VDLATRLYGREELGISSLSESLRKLIIKGPLIMFTYHVLLSTSTLIGLLWIITNCFFFIGSFFSHDNCYYHEHYYNWYGLSIMVRLVVTMALGAGFIALL
VKYMEWSGGWNMSVVVTNLNRV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G23850 unknown protein Lus10030859
[exp]
0 1
AT4G24200 Transcription elongation facto... Lus10009128
[exp]
32.8 0.6832
AT1G62930 RPF3 RNA processing factor 3, Tetra... Lus10003446
[exp]
50.5 0.5844
AT3G18290 BTS, EMB2454 embryo defective 2454, BRUTUS,... Lus10005111
[exp]
51.4 0.6448
AT2G27610 Tetratricopeptide repeat (TPR)... Lus10020586
[exp]
55.1 0.5886
Lus10033844
[exp]
89.8 0.6035
AT4G12010 Disease resistance protein (TI... Lus10009107
[exp]
150.1 0.5540
AT5G36930 Disease resistance protein (TI... Lus10007722
[exp]
153.1 0.5979
AT1G17440 CKH1, TAF12b, E... TBP-ASSOCIATED FACTOR 12B, ENH... Lus10001251
[exp]
170.7 0.5841
AT1G59820 ALA3 aminophospholipid ATPase 3 (.1... Lus10030809
[exp]
182.2 0.5931

Lus10030859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.