Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23850 128 / 5e-34 unknown protein AT1G23840 97 / 7e-23 unknown protein AT1G23830 86 / 1e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030859 [exp] 153 / 1e-44 AT1G23850 62 / 3e-11 unknown protein Lus10030630 [exp] 141 / 4e-37 AT3G47570 426 / 8e-137 Leucine-rich repeat protein kinase family protein (.1) Lus10014532 [exp] 81 / 3e-17 AT1G23850 78 / 2e-16 unknown protein Lus10032153 [exp] 52 / 1e-07 AT1G23850 49 / 1e-06 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G262900 [exp] 124 / 1e-32 AT1G23840 103 / 2e-25 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030860 pacid=23155237 polypeptide=Lus10030860 locus=Lus10030860.g ID=Lus10030860.BGIv1.0 annot-version=v1.0 ATGCTCAATATACTCAAGGAGTCCCTCGCGATCCCGTTCAGCAGCATCAAATTCATCATCTTCACATCTCTGTCTTCCTTCCCCTTCTTCACCTTCCTCT TCTTCTTCAACCTCACCCTCCAACGTTTCATCCTCCATATCAAAGACATCTTGCGCTATCCTCGGGATCAGTTCTTTGACAACGCTTTGCTCTCTCCGGT TGATCAGTTCTTCGAGTTCGCTTTCCCCTCGAAACTCGCGCAAGTCGCTCTCCTCTACATTGCACCTTACCACCTCCTCCAGTTCATCAGCACCGCCACC TCAGTCGACTTAGCCACAACGCTCTACGACGGGAAGGATCTTGGCTTCAGCAGCCTGACCGCATCCCTCCGAAAACTTATCAAGAAAGGTCCTTTTATCA CGTTCGTGTACCGAGTCCTGCTTTCTACTTCCACACTTTTTGGCCTCCTCTGGATCGTCACGAATTGCTTCGTTCTTGTTGAATCCTTCTTCAGCCATGA CTATTACTACTACTACCACCAGGAAGACTACTATTTGTACGGTCTCAGCATGATTCGAAACTCGGTGATAATTGGGGTCCGTGGAGCAGGGTTCGTTGCC TTGTTGGTTAAGTACATGGAGTGGAGTGGAGGGTGGAACGTGAACGTGGTGGTGTCGATCATCGGAGAGGAGTATGGGAACGATGCCTTCGAGGCTTCGG CCTACTATGGAGCAAGGAGTAAGGGAAGTAAGATGAGAGGTGGGGTGTTGATGTTTGTGTTCTTTGCCTGGGGAGTTGTCCTAAGGGTTCCTTGTTTGTT TGGTTTGTGGGATGTGGAGAAAGGAAGAAGAGATAGGGTTTGGTTTCTTTTGCTTGGAACTGTGTTGATATGTGTGGCCAATGTGATCAAGTGGGTTGTT TGTGCTGTCTACTTCTTTGATTGTAAGAAAAGGGTTCTGGAGAAGAAGTCTGATCACAAAGGACGTGTGAAGGAAGTGGAGAAAAGTGTGAGAACGAATG AAGAGTATATGACTCGTTAG
AA sequence Show only first row Show all	>Lus10030860 pacid=23155237 polypeptide=Lus10030860 locus=Lus10030860.g ID=Lus10030860.BGIv1.0 annot-version=v1.0 MLNILKESLAIPFSSIKFIIFTSLSSFPFFTFLFFFNLTLQRFILHIKDILRYPRDQFFDNALLSPVDQFFEFAFPSKLAQVALLYIAPYHLLQFISTAT SVDLATTLYDGKDLGFSSLTASLRKLIKKGPFITFVYRVLLSTSTLFGLLWIVTNCFVLVESFFSHDYYYYYHQEDYYLYGLSMIRNSVIIGVRGAGFVA LLVKYMEWSGGWNVNVVVSIIGEEYGNDAFEASAYYGARSKGSKMRGGVLMFVFFAWGVVLRVPCLFGLWDVEKGRRDRVWFLLLGTVLICVANVIKWVV CAVYFFDCKKRVLEKKSDHKGRVKEVEKSVRTNEEYMTR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23850			unknown protein		Lus10030860 [exp]	0	1
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10017910 [exp]	1.4	0.9544
AT3G19320			Leucine-rich repeat (LRR) fami...		Lus10002828 [exp]	2.0	0.9393
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10025322 [exp]	2.2	0.9248
					Lus10016111 [exp]	4.0	0.9168
AT3G57120			Protein kinase superfamily pro...		Lus10011517 [exp]	5.6	0.8893
AT1G07400			HSP20-like chaperones superfam...		Lus10021109 [exp]	6.0	0.9293
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10006848 [exp]	6.0	0.9135
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10008523 [exp]	6.0	0.9026
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031804 [exp]	7.3	0.9161
AT5G57710			Double Clp-N motif-containing ...		Lus10020886 [exp]	7.7	0.8908

Compare expression of checked genes

Lus10030860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.