Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60190 494 / 6e-167 AtPUB19 plant U-box 19, ARM repeat superfamily protein (.1) AT1G10560 485 / 3e-163 ATPUB18 ARABIDOPSIS THALIANA PLANT U-BOX 18, plant U-box 18 (.1) AT1G29340 254 / 2e-74 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT5G01830 222 / 3e-63 ARM repeat superfamily protein (.1) AT3G54850 203 / 2e-56 ATPUB14 plant U-box 14 (.1) AT3G46510 188 / 3e-51 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G71020 187 / 5e-51 ARM repeat superfamily protein (.1.2) AT1G23030 186 / 1e-50 PUB11 ARM repeat superfamily protein (.1) AT2G28830 185 / 4e-49 AtPUB12 PLANT U-BOX 12 (.1) AT5G42340 172 / 1e-45 PUB15 Plant U-Box 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030628 [exp] 1175 / 0 AT1G60190 553 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10029163 [exp] 885 / 0 AT1G60190 571 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10013001 [exp] 871 / 0 AT1G60190 562 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10007511 [exp] 290 / 4e-88 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10007317 [exp] 274 / 1e-81 AT1G29340 899 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Lus10017444 [exp] 272 / 1e-81 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10006090 [exp] 245 / 2e-71 AT5G01830 764 / 0.0 ARM repeat superfamily protein (.1) Lus10025244 [exp] 239 / 3e-69 AT5G01830 765 / 0.0 ARM repeat superfamily protein (.1) Lus10040834 [exp] 214 / 4e-60 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G078900 [exp] 592 / 0 AT1G60190 513 / 3e-174 plant U-box 19, ARM repeat superfamily protein (.1) Potri.015G074200 [exp] 586 / 0 AT1G60190 501 / 2e-169 plant U-box 19, ARM repeat superfamily protein (.1) Potri.011G071400 [exp] 277 / 5e-83 AT1G29340 888 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.008G071600 [exp] 271 / 3e-81 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.004G061800 [exp] 268 / 1e-79 AT1G29340 833 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.010G185900 [exp] 256 / 3e-75 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.006G107600 [exp] 240 / 1e-69 AT5G01830 729 / 0.0 ARM repeat superfamily protein (.1) Potri.016G134000 [exp] 234 / 2e-67 AT5G01830 702 / 0.0 ARM repeat superfamily protein (.1) Potri.008G035700 [exp] 210 / 4e-59 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.009G029600 [exp] 210 / 7e-59 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain CL0020 [flax] [poplar] TPR PF05536 [flax] [poplar] Neurochondrin Neurochondrin
Representative CDS sequence Show only first row Show all	>Lus10030862 pacid=23155412 polypeptide=Lus10030862 locus=Lus10030862.g ID=Lus10030862.BGIv1.0 annot-version=v1.0 ATGATCCAAAGATTCAATGGCTCACCCCGCCGGGTTCTCACCTTGCCGGCGGTCCACCCTTGCCAGAGCATCGCCCCGGAGACTCTCATCGCTTCATTGA TCACCCTCAGCCGTTCCGTCTCCGAGTACAGAACCAAGCTGTTCGGCAGTAATGCGCGGAACGCGCGGGAAACCATTCGTCAGATCGGAAACCTCGTTAT ATTACTCGAGGAGATCCTGGATTCGTGCTCGTTCATTCCTGATTCGGCTGTCGTCGGACTTTCGAACCTTCATCTGACGGTCCAGAAAGTCCGGTACCTG CTGGAGGACTGCTCTCGGGAAGGTGCTCGGATGTGGATGCTGATGAAGTCGGATCTGGTCGCTAGCCAGTTCCGGGACCTGGTTCGAGGATTGGAGATCC TTCCGATGAAGGATCTCAATCTTTCCAACGAAGCTATTGAGCTCGCCGACCTCATGATAAAACAAGCGCGGAAGGCGAGATTCGAAGTCCGATTGGATGA TGAAGTAGCCATGGGCGATGTATCGATGATGTTGAGCCGGTTCGAGAACGGCGGTGTTCCTGATCGTGATGAGATGAAGCGAGTTATGGATTACATCGGA GTGAAGAAATGGAGCGAATGTTACAGGGAGGTAAAGTTCCTGGACTCCGAGATTGAGTTTCATTTTTCAAATCCAGAAATGAGAAAGGAACTAGAGCTTT TGAGTAGGTTGTTAGGTTTAATGAACTACTCTAGGTGCGTGTTCTTCGATTCCATCAACGGCAAATCAATGCTGCCGAATGCTGAGGCTAAAGCTAGAGA TGAATTGCTTGATTGTCTCAACAGTGACGATTTCCTTTGTCCGATTTCTCTCGAGCTCACGAGGGATCCAGTCACTATAGTGACTGGACATACTTACGAT CGGTGTTCGATCGTTAAATGGTTCAGAGCTGGAAATGCAACTTGTCCCAACACAGGGAACAAGCTGTTGAGTACAGAGTTTGTACCCAACGTTGCTCTAA AGCAGTTGATTCAACTGTACTGCATCGAGAACGGGATCCAAGTTCCTGAATCGAATCGTAAGAGTCGAGACATTACCAGGACCGCCGAACCAGGCAGCTT GGCTGAGGAACTGGCTATGAAAGCCATAGCCAGTTTTCTTGCTGGGAAGCTGGTTCATGAAGATGGTAAAGGAAAGAACAAAGCAGCTTACGAGCCGCAG CTTACGAGATCCGGCTTCTTAGCAAAACAAGCATTTTTTACAGCTGGAGTTATTCCTTCTCTTTTGGAACTACTGTTGTCAGAAGATGGTTCTTCTCAAG AGAATGCCATTGCAGCCCTTCTGAATCTTTCAAAGCATTCCAAGAGTAAAGCTTTGATCTTTGACAATGGAGGGGTAAAGTTGATTGTAGGCGTTTTATA CAACGGAGCCAAGGTGGAAGCTAGGCAGCATGCTGCTGCAACGCTCTTTTATCTTGCTTCGATCGAAGAGTACAGGAAATCGATCGTCGAAACGAAAGAT GCTATCTTGGCTTTGGTAGAGATGGTGAAGGATTCAAGCTACAGGGGACTAAAGAATGCTCTTGCTGCAATTTACGCCCTGCTGATGCATACAGGAAACC ACTCGAGGGTTCTTGCATCCGGAGCAGTTCCATTGTTGCTCAATGTTGCGAGCTCTTCAGACATCGAAGAGCTCGTAACGGATTCTTTAGCAGTTCTAGC AACCCTGGCGGAGAAACCTGAGGGAGCGAAAGCGATTATTAGATGCGGAGCTTTGCCTCAGGTTGTCCAGATTCTAGCCACCACCACTCCAAGTGCTACA AAGGAGCACTGTGTCTGTCTGTTACTGGCTCTGTCCATCAATGGCGGTGAAGACGCTGCAGTAGCTCATCTGGTACAAAGCCCTTCTCTTATGGGATCAT TATACTCCCAGCTCAGCGAAGGCACTTCTCGAGCAAGGAAGAAAGCCAATGCTCTCATTAGGGTTCTTCACGAATTCCATGAAGGAAGCACATCCGCTTC GAAGCCGACAGTTTTTCCTCGTGGACGATTCGTCCATGCGTGGTAA
AA sequence Show only first row Show all	>Lus10030862 pacid=23155412 polypeptide=Lus10030862 locus=Lus10030862.g ID=Lus10030862.BGIv1.0 annot-version=v1.0 MIQRFNGSPRRVLTLPAVHPCQSIAPETLIASLITLSRSVSEYRTKLFGSNARNARETIRQIGNLVILLEEILDSCSFIPDSAVVGLSNLHLTVQKVRYL LEDCSREGARMWMLMKSDLVASQFRDLVRGLEILPMKDLNLSNEAIELADLMIKQARKARFEVRLDDEVAMGDVSMMLSRFENGGVPDRDEMKRVMDYIG VKKWSECYREVKFLDSEIEFHFSNPEMRKELELLSRLLGLMNYSRCVFFDSINGKSMLPNAEAKARDELLDCLNSDDFLCPISLELTRDPVTIVTGHTYD RCSIVKWFRAGNATCPNTGNKLLSTEFVPNVALKQLIQLYCIENGIQVPESNRKSRDITRTAEPGSLAEELAMKAIASFLAGKLVHEDGKGKNKAAYEPQ LTRSGFLAKQAFFTAGVIPSLLELLLSEDGSSQENAIAALLNLSKHSKSKALIFDNGGVKLIVGVLYNGAKVEARQHAAATLFYLASIEEYRKSIVETKD AILALVEMVKDSSYRGLKNALAAIYALLMHTGNHSRVLASGAVPLLLNVASSSDIEELVTDSLAVLATLAEKPEGAKAIIRCGALPQVVQILATTTPSAT KEHCVCLLLALSINGGEDAAVAHLVQSPSLMGSLYSQLSEGTSRARKKANALIRVLHEFHEGSTSASKPTVFPRGRFVHAW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Lus10030862 [exp]	0	1
AT5G07620			Protein kinase superfamily pro...		Lus10042988 [exp]	24.0	0.6542
AT1G61100			disease resistance protein (TI...		Lus10018471 [exp]	69.1	0.6240
AT3G14440		SIS7, ATNCED3, ...	SALT TOLERANT 1, SUGAR INSENSI...		Lus10026185 [exp]	84.3	0.5579
AT5G57330			Galactose mutarotase-like supe...		Lus10041629 [exp]	123.8	0.5440
AT1G78020			Protein of unknown function (D...		Lus10000693 [exp]	130.4	0.5871
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10025464 [exp]	229.9	0.5409
AT1G51980			Insulinase (Peptidase family M...		Lus10035000 [exp]	235.0	0.5463

Compare expression of checked genes

Lus10030862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.