Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02010 165 / 2e-43 Protein kinase superfamily protein (.1) AT1G29730 164 / 2e-42 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56720 157 / 1e-41 Protein kinase superfamily protein (.1.2.3) AT3G59110 157 / 2e-41 Protein kinase superfamily protein (.1) AT1G61590 154 / 2e-41 Protein kinase superfamily protein (.1) AT3G58690 153 / 4e-41 Protein kinase superfamily protein (.1) AT1G09440 154 / 5e-41 Protein kinase superfamily protein (.1) AT1G29720 159 / 6e-41 Leucine-rich repeat transmembrane protein kinase (.1) AT3G55450 152 / 8e-41 PBL1 PBS1-like 1 (.1.2) AT1G16130 157 / 1e-40 WAKL2 wall associated kinase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030626 [exp] 673 / 0 AT1G53440 117 / 2e-28 Leucine-rich repeat transmembrane protein kinase (.1) Lus10030627 [exp] 301 / 1e-100 AT3G46350 96 / 7e-24 Leucine-rich repeat protein kinase family protein (.1) Lus10006544 [exp] 239 / 2e-69 AT3G59110 205 / 1e-57 Protein kinase superfamily protein (.1) Lus10003274 [exp] 235 / 2e-69 AT1G70530 205 / 4e-59 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10014387 [exp] 169 / 5e-45 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10003244 [exp] 167 / 1e-43 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003942 [exp] 166 / 3e-43 AT3G51550 656 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10010703 [exp] 157 / 8e-43 AT1G24030 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10035605 [exp] 164 / 2e-42 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G030600 [exp] 231 / 8e-68 AT1G24030 191 / 2e-55 Protein kinase superfamily protein (.1.2) Potri.013G053001 [exp] 213 / 3e-61 AT1G79620 201 / 5e-55 Leucine-rich repeat protein kinase family protein (.1) Potri.003G185732 [exp] 175 / 4e-48 AT1G17910 446 / 8e-150 Wall-associated kinase family protein (.1) Potri.003G185750 [exp] 177 / 8e-48 AT1G16260 559 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G185800 [exp] 176 / 2e-47 AT1G16260 530 / 7e-180 Wall-associated kinase family protein (.1.2) Potri.006G118500 [exp] 175 / 3e-47 AT5G02070 577 / 0.0 Protein kinase family protein (.1) Potri.003G185850 [exp] 176 / 4e-47 AT1G69730 535 / 1e-180 Wall-associated kinase family protein (.1) Potri.002G194700 [exp] 172 / 9e-46 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.003G186200 [exp] 171 / 1e-45 AT1G79680 510 / 2e-172 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.001G040756 [exp] 165 / 1e-45 AT1G69730 448 / 3e-152 Wall-associated kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10030863 pacid=23155198 polypeptide=Lus10030863 locus=Lus10030863.g ID=Lus10030863.BGIv1.0 annot-version=v1.0 ATGGCCATCGAAATCTCCGATCATCATAATAATCACTACTACAATCACCCAAAACCTTTTCACCTCCAACAAGAGAAAAACCAGAAAACCCATTCATTCT TCCTTCTTGTTCATCATCATTCCCAAAAGAAAATGAACCTCCAACACCGCCAAGCCCTTTCCTTTTCTTCAACCCTCTTCACCATTTTCATCCTCCTCCT AAACCCACTTCCCATCTCCTCCCAATCCTGCATCCTCAACTTCAACCCTACCATTGAATCCACCAAACCCTGCAACGACAGTCAAGCAACCTGGGGGGGC TTCATCGATGGCGGAAACTGCTGTTCATCTTCTTTCAACGATTACCTCTTCGGATTGGCCCAATGGGCTTCTCAATCAGGCCAGATTTTCCTTAGCTCCA CTGATCAGAGCATCTGCTTGAGCAGCAACAAGAAGAATCTGGGTTCCTGCGGATTTGACAGGCTTACCAGCGGAGGAATCGATGGTGGTGAGTGTTCTAG CTACACGGTGGCTGATGTGGCTTCCAAGCTGGATGCTGAGCTGGAATCCATGTACGAGAACTGCAATCTGACTGCCGGCGGTGGAGGGTGCAGGGGATGT GGTGAGAAGTGGGGGGAGATTGGGGAGTCGTTGAATCATGGGTCGAAGTTGCAAGCTGATGTTTGTAGGTTCGCAGTTTTGGTCACGTTGACCAGTAATT GGGTTGGAACTTCCAGAGACAAAGTTGAGGAAATTTATGATTGCATCTCTCAGGGTATCCTGATTGCGAGCATTAGCATTGGCGCATTCGTGGCGATAGT CGTGGTTCTCCTGTGGATCATGAGCAGAAGGAAGGCTAAGGAAGCCAGGACATCGGCTAAATCACGTTCCTTTAGCAAAGCATCACAGGATCTCAAGTTC AAGCAGCCCAACAAGCTCAAGATATCAATCAAGGAGATCTACTCTGCTACGAATCACCTCGACGAATCCAACTACATTGGCCAAGGAATCGCCGGAAAGG TTTACAAAGGGACTATGTCAGACGGGCAGGCGGTTGCAGTGAAGCACATAGTGAACGATGGCCACGTCGAGACATTCGTGAGAGAAGTCACGAGTCTTTC TCACGTAAGGCATCCGAATCTCGTAGCTTTGATCGGCTGCTGCAAGCATGAAGATGAGTACTTCCTGGTGTATGAGCTCTGCAAAAATGGCAACTTATCA GAATGGCTCTACAGTAAGGAATCTCCAACGAACATTCTTCTCGACACCAATTTCCAAGCGAAGCTATCAGATTTCGGGCTGTCAAAAGTTATGAACTTGG GACAGTCCTTTGTGAGTTCGGAAGTTAGAGGAACATTCGGCTATGTGGATCCGGAGTATCAGAGGAACCACCACGTCAACGCGAAGGGTGATGTGTACAG CTTCGGAATCGTGCTGATGCAGCTTCTGTCTGGACAGAAGGTGATCAATATGAACCACAACACACACATGCAACTAAACAAGAAGGCGTCGTTTCTCGCT GCGAATGGGAAAGTAGCGGAATTTGCAGATCCAAAACTCAACGGGGAGTATTCGGTGGAAGCTTTCGAGATAATATTCAAGCTGGCAGTTACGTGCTCAG GGCGTAAGCAGGACAGGCCGACAATGGAGGCAGTGGTAAGAAGACTAGAGAAAGCACACGAAATCTCGATGAGATTATCGAATGAAAGAAGCATGAATAT CTCAATGATTTACGACAGAAGCATGAACATCTAA
AA sequence Show only first row Show all	>Lus10030863 pacid=23155198 polypeptide=Lus10030863 locus=Lus10030863.g ID=Lus10030863.BGIv1.0 annot-version=v1.0 MAIEISDHHNNHYYNHPKPFHLQQEKNQKTHSFFLLVHHHSQKKMNLQHRQALSFSSTLFTIFILLLNPLPISSQSCILNFNPTIESTKPCNDSQATWGG FIDGGNCCSSSFNDYLFGLAQWASQSGQIFLSSTDQSICLSSNKKNLGSCGFDRLTSGGIDGGECSSYTVADVASKLDAELESMYENCNLTAGGGGCRGC GEKWGEIGESLNHGSKLQADVCRFAVLVTLTSNWVGTSRDKVEEIYDCISQGILIASISIGAFVAIVVVLLWIMSRRKAKEARTSAKSRSFSKASQDLKF KQPNKLKISIKEIYSATNHLDESNYIGQGIAGKVYKGTMSDGQAVAVKHIVNDGHVETFVREVTSLSHVRHPNLVALIGCCKHEDEYFLVYELCKNGNLS EWLYSKESPTNILLDTNFQAKLSDFGLSKVMNLGQSFVSSEVRGTFGYVDPEYQRNHHVNAKGDVYSFGIVLMQLLSGQKVINMNHNTHMQLNKKASFLA ANGKVAEFADPKLNGEYSVEAFEIIFKLAVTCSGRKQDRPTMEAVVRRLEKAHEISMRLSNERSMNISMIYDRSMNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09440			Protein kinase superfamily pro...		Lus10030863 [exp]	0	1
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006835 [exp]	5.8	0.9529
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10032745 [exp]	9.5	0.9516
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10017879 [exp]	10.2	0.9412
AT4G27870			Vacuolar iron transporter (VIT...		Lus10037315 [exp]	10.5	0.9248
AT5G03890			unknown protein		Lus10015117 [exp]	11.0	0.9403
AT3G26170		CYP71B19	"cytochrome P450, family 71, s...		Lus10018261 [exp]	12.0	0.9452
AT1G16310			Cation efflux family protein (...		Lus10001768 [exp]	14.7	0.9424
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10018262 [exp]	14.7	0.9389
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10024685 [exp]	15.1	0.9331
AT1G56010	NAC	NAC1, ANAC021, ...	Arabidopsis NAC domain contain...		Lus10042466 [exp]	20.0	0.9288

Compare expression of checked genes

Lus10030863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.