Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01460 74 / 1e-14 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030864 [exp] 391 / 2e-126 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1) Lus10030625 [exp] 332 / 2e-104 AT3G01460 706 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030624 [exp] 93 / 7e-22 AT3G01460 59 / 2e-09 methyl-CPG-binding domain 9 (.1) Lus10022224 [exp] 74 / 9e-15 AT3G01460 990 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10008796 [exp] 73 / 2e-14 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G072460 [exp] 89 / 1e-19 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030865 pacid=23155393 polypeptide=Lus10030865 locus=Lus10030865.g ID=Lus10030865.BGIv1.0 annot-version=v1.0 ATGCTGGACGGCTATTCTGGGCATTCTACAGACCAGGTTCAACTCCATGGATCCTGGTTGATTGCAGCATGCTGGCCCAGGAACGTAGCACCAGCAGTGA TCACACTGGCGTCGGGTGTGGCAGTTCAGCTTCCTCATCCTCTGCCTATGGACAATGACTTTATAGAGTCCTTACTGCGGCTTCAAAAATTTGAATTCGT GGAACCTGCCAATGTTGGGGACATTGGTCAGGGCACATCTCAGTTAACTTTGACACCCCAAACCACTGAAATGGCTGGCAAGTTTTGTTCTCTTGCAACG AGAGCTTTGGTCTCATTGGAGAGAAAATATGGTCCTTGGTCGAAGACTGACGGGACCATCATCCCGGTGGACAAGTTGCTGGATGAGGAAGAAAAGAAGC AGGTTGTAATGTACCGTTGTGGATGCTTAGAGCTGGTATGGACGTCCAGGCATCATTGTCGACTATGTCACATGACGTATTCCTCCAGCTATGGAATCAC GGCACATAATGGCGCCGAGTGTAGTTCTGGGACCAGTGCTTCTGAGAGTGCGCAGCTGAAAGGGAAATCTGCAGACGCCCAAGCTGTGCTGGGAGAACAA GAGGACTGCTCTGAGGAAGCAACTCCAAACAATTTAGGCACAGGCCCTGGCACTGGCTCTGAGCTAGACGAGGAGAGAAAGGGTTGCACATCCCCTTACG AACTTAAAGCAGTAAGTGCAAAGTTCGTCACTCAGAGCTTGAACAAGGTGCTGGTGAAGCAGATTGGGCTTCTTGGTTCAGACGGGATCCATCATTAG
AA sequence Show only first row Show all	>Lus10030865 pacid=23155393 polypeptide=Lus10030865 locus=Lus10030865.g ID=Lus10030865.BGIv1.0 annot-version=v1.0 MLDGYSGHSTDQVQLHGSWLIAACWPRNVAPAVITLASGVAVQLPHPLPMDNDFIESLLRLQKFEFVEPANVGDIGQGTSQLTLTPQTTEMAGKFCSLAT RALVSLERKYGPWSKTDGTIIPVDKLLDEEEKKQVVMYRCGCLELVWTSRHHCRLCHMTYSSSYGITAHNGAECSSGTSASESAQLKGKSADAQAVLGEQ EDCSEEATPNNLGTGPGTGSELDEERKGCTSPYELKAVSAKFVTQSLNKVLVKQIGLLGSDGIHH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030865 [exp]	0	1
AT5G55600			agenet domain-containing prote...		Lus10003906 [exp]	6.9	0.8362
AT3G49990			unknown protein		Lus10015447 [exp]	7.9	0.8246
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003747 [exp]	8.1	0.8253
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10004003 [exp]	10.2	0.7931
AT5G36930			Disease resistance protein (TI...		Lus10042165 [exp]	13.4	0.8381
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10033458 [exp]	14.4	0.8418
AT3G13682		LDL2	LSD1-like2 (.1)		Lus10038587 [exp]	16.6	0.8277
AT1G69290			Pentatricopeptide repeat (PPR)...		Lus10036907 [exp]	19.9	0.7559
AT5G04670			Enhancer of polycomb-like tran...		Lus10008985 [exp]	22.1	0.8084
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10040634 [exp]	23.0	0.7974

Compare expression of checked genes

Lus10030865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.