Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60200 282 / 6e-81 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) AT1G71800 45 / 0.0003 CSTF64 cleavage stimulating factor 64 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030623 [exp] 1142 / 0 AT1G60200 558 / 0.0 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Lus10013003 [exp] 456 / 8e-145 AT1G60200 638 / 0.0 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Lus10029161 [exp] 435 / 5e-137 AT1G60200 566 / 0.0 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Lus10028714 [exp] 50 / 9e-06 AT1G71800 308 / 1e-100 cleavage stimulating factor 64 (.1) Lus10014814 [exp] 45 / 0.0002 AT1G71800 350 / 2e-116 cleavage stimulating factor 64 (.1) Lus10017923 [exp] 45 / 0.0002 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G147100 [exp] 365 / 4e-111 AT1G60200 323 / 1e-96 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Potri.010G094700 [exp] 353 / 2e-106 AT1G60200 320 / 4e-95 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Potri.002G061200 [exp] 45 / 0.0002 AT1G71800 354 / 3e-117 cleavage stimulating factor 64 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01480 [flax] [poplar] PWI PWI domain CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10030866 pacid=23155385 polypeptide=Lus10030866 locus=Lus10030866.g ID=Lus10030866.BGIv1.0 annot-version=v1.0 ATGGCCGAACATCCTCCCTCGACTCCCTCCGCCGCGCCGCCGGACTCCAATCTTCAGCCATCGCCCACTGATAACGCCGCTCCTAAGTCGGATCTAGCTC CCGCCTCCTTGGCGCCACCACAATCCTCGATCACGCCATCGCCCAATCCCAACCCCGCCAATATTCCGGTTCTTCTTCCAACTCCGTCGCCGTTCCCTTC CGCCTACGGTCTTCCGCCCCCACCACAAGTCATGTCCGGCGCGTCGGTGCCGTCGCTAACCATGGCGCCGTCGTTTCGTCCGACTCCGCAGTTCACTCCC GTCCCAAGCTATCAGAATCAGGCCACAGTTGGTGTTCAGCCTCCAGGTACAGCAATGACTTCTTCTGCTCCGCCGGTGATGCCTCCTTATCAGCCTCCCA ACCAGATTATGAGGCCTCCGTATGCAGCAGTGCCTAACGGTTATCCGCCTGTGCCCGGAGTTGCTCCCCGGAGTTGTTCATCAAGGAATCATGGCTCCGC GTGGTGGGTTGATCTTGCTCTGTTCTTCATTTTCTTGCTTCTTATGTATGGCCTTAATCCATGTCTATCGCCGGCCATGGTAGCACCTGAGTGCTCCTTG GCATTATATCTAAGGTTACCTATTCAGCTGGTGATTCTTGATTCCTGTGGAATGCCTCGTTATCCTTCACCTTATCCAGCTATGGTCCGCCCCATATTCA CTCCACGTCCTCCTGGTGTGCTTCCGATGACTCGTCCTCTTGTTCCAAATATTCCTGGAGTTCGTCCTATTATCTCTCCTATTATTAGGCCAGCTGTACC TTCCGTGACCCCAGCTGAGAAGCCTCACACTACAGTTTATGTGGGCAAGATATCACCAAGTGTGGAGAATGAGTTTATGCTGTCTCTTCTTCAGTGCAAT TTTATTGAACCAGAGCCTGACTTCCCTCCATTTTCTCTTCTTTCTTTTTTGTCTTCTGCTCGCGGCAATTACTTCATGAAGCTTTGTGGACCCGTAAAGA GTTGGAAACGTGCCCAAGACCCTAGTGATGGGACACCTAGACGTTTTGGATTTTGTGAATTCGAAACTGCTGAGGGCATTCTCCGTGCATTACGTCTACT CAGTAAATTTAATATTGATGGGCAGGAACTGGTGTTAAATGTTGATCAAGCGACACGAGAATATCTAGATCGGTATGTCGAAAGGAAAACTGAGAATTGG AAGAATCTCAGAGATGGGGCTAACAAGCAGGATAATGCTCCCGCTGATGCTGAGAAGAATGGGCCATCCGAGGCATCTGAGAAGACTGAATTTGCCAACT CTTCAGTTAATGATTCAGGAAAAGAGGAGAAAGCAAATCCTGACCTTGCCAATTTTGGTATTGTAAGTGACGAAGATAAAGAAAATGACAAGACGGCATT GGAGAAGCTTACTAATATGAAAGAAGAAAGGTTGAAGACCAAACCTCTGCCGCCTCCTCCCCCTCCCCCACCGCTTCCTATTGGTGGTTCTGGCAATCCA AATATTGAGCAAATCAAATCAAAGGATGGGGACTCAGACACTGATGCACTCAGAGATGATGTCCGCGGAGAAAAAAATAATGGTGACCAGGCAAATGAAC ATGAAAGGTCTGAGGTAAGCTCACCAGACAATAACAAAAGGTATGTTAGAAGCAGCAGAGACAGGGATAAAGATCTTAAAGAAGAAAAAGATCGAGCAAT GGTCAGATTTGAGAGGGAAGCAGAGCGAGAACGGGTTCGGAAGGAGAGGGAACTGAGAAGGAAGATGGAAGAGGCCGAGCGTGAGTATGAAGAACGTTTA AGAGATTGGGAATATAGAGAGAGGGAGAAAGAGAAACAACGGCAGTATGAGAAAGAAAGGGAGAAAGAAAAAGAACACAAGCGGCTAAAGGAGATTCTTC GTGATGAAGAAGATGAATATGATGATTCAGGGAAAAGATGGCGGAGGAGCATTATAGAGGAGAAGAGAAGGAGAAGACAACGGGAGAAGGAAGACGACTT GGCTGACAGGCTGAAAGAAGAGGAAGAAATCGCCGAAGCCAATAAGATCGCTGAAGAGGAAAGAAAGCTGCAACATGAAAAAGATGCTGCGCTGAAACTT CAATCTGCTGATCTCATGAATGGTAGTGAAAATGCTGCTTCACCTGATGAAATGGTGGCCGAAAGCAAGCATAAGGTCAGTGGGCCAGTTGAGGAGAATG GTGCTTATGATGTTTCAACTGTGCTAATGGCTGAATCAGAAGCACAGCGGGAGAGTACCAATGCTGCCACAAGAAAGTTGGGGTTTGGTTTAGCTGGATC CGGGAAGCGTGCTGCGGTACCTTCGGTTTTCCATGAAGATGATGATGATGCACATAAGGATAAAAAAATGAGGCCTTTAGTTCCGATCGATTATACCACA GAGGAATTGCAGGTTGTCCAACCCCCTACTTCTGAAGCTCAACCGCTGAATCTTGCCGCAGCTGCAGAATATGCGAAGCAGATATCTAATATTGCTCCCA AGGAAGAGAAAACGGAAGGTGGAAGGGAGAAAAGCCATCGCTCTCATGATCGGTCAGGTCGACGTGAGAAACATGACGAGGAGAGTTATCGGTCCAGGGA AGAGAAGGTTGACCAAGATCGTGGTCTGGATAAGGCGAAGACCCCAGATAAACAGAAGCTTTTAAATGCGAAACAGCTGATTGATATGATCCCAAAGACC AAGGACGAGTTGTTCTCGTACGACATTAATTGGACCATTTACGACAAGCACTCTCTACACGATAGAATGAGACCATGGATTTCGAAGAAGATAACGGAGT TTCTGGGAGAGGAAGAAGCAACGCTAGTAGATTACATAGTGTCGAGTACGAAGGAACATGTTAAAGCTGCACAAATGCTGGAGTTGCTTCAGTCCATACT CGATGACGAAGCCGAGATGTTTGTGCTCAAAATGTGGAGGATGCTCATCTTTGAGATTAAAAAGGTCGAGACCGGCCTGGATTTGAAGTCTAAATCATAA
AA sequence Show only first row Show all	>Lus10030866 pacid=23155385 polypeptide=Lus10030866 locus=Lus10030866.g ID=Lus10030866.BGIv1.0 annot-version=v1.0 MAEHPPSTPSAAPPDSNLQPSPTDNAAPKSDLAPASLAPPQSSITPSPNPNPANIPVLLPTPSPFPSAYGLPPPPQVMSGASVPSLTMAPSFRPTPQFTP VPSYQNQATVGVQPPGTAMTSSAPPVMPPYQPPNQIMRPPYAAVPNGYPPVPGVAPRSCSSRNHGSAWWVDLALFFIFLLLMYGLNPCLSPAMVAPECSL ALYLRLPIQLVILDSCGMPRYPSPYPAMVRPIFTPRPPGVLPMTRPLVPNIPGVRPIISPIIRPAVPSVTPAEKPHTTVYVGKISPSVENEFMLSLLQCN FIEPEPDFPPFSLLSFLSSARGNYFMKLCGPVKSWKRAQDPSDGTPRRFGFCEFETAEGILRALRLLSKFNIDGQELVLNVDQATREYLDRYVERKTENW KNLRDGANKQDNAPADAEKNGPSEASEKTEFANSSVNDSGKEEKANPDLANFGIVSDEDKENDKTALEKLTNMKEERLKTKPLPPPPPPPPLPIGGSGNP NIEQIKSKDGDSDTDALRDDVRGEKNNGDQANEHERSEVSSPDNNKRYVRSSRDRDKDLKEEKDRAMVRFEREAERERVRKERELRRKMEEAEREYEERL RDWEYREREKEKQRQYEKEREKEKEHKRLKEILRDEEDEYDDSGKRWRRSIIEEKRRRRQREKEDDLADRLKEEEEIAEANKIAEEERKLQHEKDAALKL QSADLMNGSENAASPDEMVAESKHKVSGPVEENGAYDVSTVLMAESEAQRESTNAATRKLGFGLAGSGKRAAVPSVFHEDDDDAHKDKKMRPLVPIDYTT EELQVVQPPTSEAQPLNLAAAAEYAKQISNIAPKEEKTEGGREKSHRSHDRSGRREKHDEESYRSREEKVDQDRGLDKAKTPDKQKLLNAKQLIDMIPKT KDELFSYDINWTIYDKHSLHDRMRPWISKKITEFLGEEEATLVDYIVSSTKEHVKAAQMLELLQSILDDEAEMFVLKMWRMLIFEIKKVETGLDLKSKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60200			splicing factor PWI domain-con...		Lus10030866 [exp]	0	1
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Lus10013121 [exp]	4.1	0.8855
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10017459 [exp]	5.8	0.8274
AT1G29850			double-stranded DNA-binding fa...		Lus10004609 [exp]	6.6	0.8401
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10010687 [exp]	7.7	0.8476
AT2G43080		AT-P4H-1	P4H isoform 1 (.1)		Lus10035434 [exp]	12.3	0.8432
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10002070 [exp]	15.7	0.8218
AT5G37720		DIP2, ALY4	interacting with DNA-binding d...		Lus10000446 [exp]	15.8	0.8606
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10019609 [exp]	18.7	0.8413
AT5G19900			PRLI-interacting factor, putat...		Lus10019670 [exp]	20.8	0.8386
AT3G49200			O-acyltransferase (WSD1-like) ...		Lus10019840 [exp]	23.2	0.8485

Compare expression of checked genes

Lus10030866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.