Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60220 217 / 9e-64 ULP1D, OTS1 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) AT1G10570 214 / 5e-63 ULP1C, OTS2 UB-LIKE PROTEASE 1C, OVERLY TOLERANT TO SALT 2, Cysteine proteinases superfamily protein (.1.2) AT4G33620 121 / 4e-29 Cysteine proteinases superfamily protein (.1) AT1G09730 109 / 4e-25 Cysteine proteinases superfamily protein (.1.2) AT4G15880 62 / 4e-10 ATESD4, ESD4 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) AT3G48480 61 / 4e-10 Cysteine proteinases superfamily protein (.1) AT4G00690 56 / 4e-08 ULP1B UB-like protease 1B (.1) AT3G06910 52 / 6e-07 ULP1A, ELS1, AtULP1a ESD4-LIKE SUMO PROTEASE 1, UB-like protease 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030622 [exp] 675 / 0 AT1G60220 253 / 7e-77 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Lus10000917 [exp] 127 / 6e-31 AT1G09730 514 / 1e-169 Cysteine proteinases superfamily protein (.1.2) Lus10020445 [exp] 112 / 7e-26 AT4G33620 404 / 6e-129 Cysteine proteinases superfamily protein (.1) Lus10023104 [exp] 55 / 1e-07 AT4G15880 407 / 5e-138 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Lus10035097 [exp] 51 / 5e-07 AT3G48480 146 / 4e-43 Cysteine proteinases superfamily protein (.1) Lus10002875 [exp] 49 / 5e-06 AT4G15880 404 / 2e-136 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G040600 [exp] 259 / 6e-80 AT1G60220 410 / 3e-137 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Potri.007G115400 [exp] 125 / 2e-30 AT1G09730 427 / 3e-135 Cysteine proteinases superfamily protein (.1.2) Potri.002G105700 [exp] 124 / 6e-30 AT1G09730 580 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.005G155600 [exp] 119 / 3e-28 AT1G09730 551 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.017G044000 [exp] 118 / 7e-28 AT1G09730 452 / 4e-143 Cysteine proteinases superfamily protein (.1.2) Potri.015G090800 [exp] 63 / 1e-10 AT3G48480 228 / 8e-74 Cysteine proteinases superfamily protein (.1) Potri.010G180300 [exp] 56 / 2e-08 AT3G48480 278 / 3e-93 Cysteine proteinases superfamily protein (.1) Potri.008G221500 [exp] 50 / 2e-06 AT4G15880 436 / 3e-149 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Potri.010G013700 [exp] 50 / 2e-06 AT4G15880 322 / 8e-104 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02902 [flax] [poplar] Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10030867 pacid=23155181 polypeptide=Lus10030867 locus=Lus10030867.g ID=Lus10030867.BGIv1.0 annot-version=v1.0 ATGGCGGAAGGCAGCTCGAAGAAGCCGAAACTGATACTCGATTTGGACGAGATTGTCCGCCAGACTGAAGACAATGGTTCTCTTCCCGAGACTGTCTCTC AGATGGACAGTCGTTCCAGTGATGATCGGAGCCAGCGCCGACCGTCCACCCCGTCGACGGAATCTGAGTACCCAGAGCACTATTCCTTGAAGGAAGAGTG CGGCCGGATGGATGATCGGAAACTGGAAGAGACCATCCAGAGACATAAAAAGCTTGTGGCGAAGAATTTTGGCCAGAAATTGCCCGACGGAGGGAGGAAA ATCCAGGCTGCCATAAAAATCATGGAAAACGAGCGAGAGAAGAGGAAAACGGAAAGGCCCAGAATGAATGCTGATAAATCCAAGCAACCCGCACAGCTAG CAAATCCAGGGTCAAATGGTGAGCATAACTATAGCGAGCAGCCGGGGTTTACCTCGATGTTTCGGAAGAAGATGCAACATGATGTGCGCTCAGACCATAA GGCTTTTGATAGAGATTTCACTGCTCTGGGAAGAGGCGTGAAAGTGAAATCTTCTGATGATCCTTCCCACAAAGCAAGACAGAGAAATGAGTCATCAAGA CGACAACCTTTTCAATCTTCTTTCCGGTCGTCTGTTGGTAATCGGGGTAGCAAGAATATGGACATAACTCCTTGTAACTTTTACTCCAGAGGGGAAAGGA TAGCCAAGAAAAATTATAATGGGGGTGATCAAGACTCTGTTCAAGTTCAATACACGGATATGAAATGTCTGGCCCCTAAAAGTCTGGTGACCTCAGAAGT TATGAACTTTTACATTCGGTACCTAGAGGTACAACTGATGCCGACAAAGAAGGGTAATTCCCACATATTCTCTACGTTCTTCTACAGTAAGCTGAAACGA GAACTATCAGACAAGGGAAGTGAAAAAGAGTCCGTTTTTGGCAAGTGCAGAAAATGGTGGAAGGGCATTAATCTGTTTGAAAAGGCTTATGTACTGATTC CCATCCATGAAGAGAGTCACTGGAGCTTGGTGATAATCTGTTTCCCAGAAAAGGATGACAAATCAGATCTGATCCTTCTTCATCTAGACTCATTGGAACT TCACTCCACAAGAGACATTTTCGACGTGATCAAAAGCTGCTTGACAGAAGAATGGAAGTGTTTGCATAAAGGCATTGCTCCTTCTGATCTCCAGATGTCC GAAAACAGGATATTGACACGTCTTCCTGATATCTATTCGAAAAGCGTAAAGGTTCCCCAACAGGCAAATGACTACGATTGTGGCATCTTTGTACTCTACT TCATGCAGCGATTCATCGAAGATGCCCCGGAGAGGCTGAAACGACAGGATCTTCACTTGTTCAGTCGACATTGGTTCCACCCTGAAGAAGCATGCCGTCT GAGGAGAAAAATCAGAGACATCCTCATGACTGAGTTTCTCAATGCAAGAAAGGAATCGCGGTCTTCCGACTAA
AA sequence Show only first row Show all	>Lus10030867 pacid=23155181 polypeptide=Lus10030867 locus=Lus10030867.g ID=Lus10030867.BGIv1.0 annot-version=v1.0 MAEGSSKKPKLILDLDEIVRQTEDNGSLPETVSQMDSRSSDDRSQRRPSTPSTESEYPEHYSLKEECGRMDDRKLEETIQRHKKLVAKNFGQKLPDGGRK IQAAIKIMENEREKRKTERPRMNADKSKQPAQLANPGSNGEHNYSEQPGFTSMFRKKMQHDVRSDHKAFDRDFTALGRGVKVKSSDDPSHKARQRNESSR RQPFQSSFRSSVGNRGSKNMDITPCNFYSRGERIAKKNYNGGDQDSVQVQYTDMKCLAPKSLVTSEVMNFYIRYLEVQLMPTKKGNSHIFSTFFYSKLKR ELSDKGSEKESVFGKCRKWWKGINLFEKAYVLIPIHEESHWSLVIICFPEKDDKSDLILLHLDSLELHSTRDIFDVIKSCLTEEWKCLHKGIAPSDLQMS ENRILTRLPDIYSKSVKVPQQANDYDCGIFVLYFMQRFIEDAPERLKRQDLHLFSRHWFHPEEACRLRRKIRDILMTEFLNARKESRSSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60220		ULP1D, OTS1	OVERLY TOLERANT TO SALT 1, UB-...		Lus10030867 [exp]	0	1
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10032822 [exp]	11.2	0.8726
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10003510 [exp]	17.5	0.8348
AT2G44180		MAP2A	methionine aminopeptidase 2A (...		Lus10000403 [exp]	21.2	0.8534
AT4G34140			D111/G-patch domain-containing...		Lus10039947 [exp]	21.2	0.8435
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10034921 [exp]	34.3	0.8378
AT1G23230			unknown protein		Lus10016701 [exp]	36.2	0.8262
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10032065 [exp]	37.1	0.8333
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10030154 [exp]	37.9	0.8463
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Lus10020683 [exp]	41.9	0.7620
AT3G11290			unknown protein		Lus10002039 [exp]	44.0	0.8365

Compare expression of checked genes

Lus10030867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.