Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01490 242 / 8e-77 Protein kinase superfamily protein (.1) AT3G63260 238 / 1e-75 ATMRK1 Protein kinase superfamily protein (.1.2) AT4G14780 234 / 3e-74 Protein kinase superfamily protein (.1) AT5G50000 234 / 4e-74 Protein kinase superfamily protein (.1) AT3G22750 229 / 3e-72 Protein kinase superfamily protein (.1) AT3G46930 164 / 3e-46 Protein kinase superfamily protein (.1) AT4G31170 160 / 2e-45 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 157 / 2e-44 Protein kinase superfamily protein (.1) AT5G58950 156 / 5e-43 Protein kinase superfamily protein (.1) AT4G38470 149 / 5e-40 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030621 [exp] 536 / 0 AT3G01490 284 / 2e-92 Protein kinase superfamily protein (.1) Lus10022227 [exp] 239 / 2e-75 AT3G01490 665 / 0.0 Protein kinase superfamily protein (.1) Lus10039357 [exp] 238 / 3e-75 AT3G22750 611 / 0.0 Protein kinase superfamily protein (.1) Lus10042622 [exp] 234 / 4e-74 AT3G22750 605 / 0.0 Protein kinase superfamily protein (.1) Lus10002368 [exp] 232 / 5e-73 AT5G50000 659 / 0.0 Protein kinase superfamily protein (.1) Lus10042129 [exp] 231 / 9e-73 AT5G50000 657 / 0.0 Protein kinase superfamily protein (.1) Lus10006603 [exp] 228 / 2e-71 AT3G22750 607 / 0.0 Protein kinase superfamily protein (.1) Lus10022076 [exp] 188 / 1e-56 AT3G22750 545 / 0.0 Protein kinase superfamily protein (.1) Lus10020374 [exp] 159 / 8e-45 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G079000 [exp] 241 / 7e-77 AT5G50000 661 / 0.0 Protein kinase superfamily protein (.1) Potri.015G074400 [exp] 238 / 1e-75 AT5G50000 654 / 0.0 Protein kinase superfamily protein (.1) Potri.017G072900 [exp] 238 / 2e-75 AT3G01490 667 / 0.0 Protein kinase superfamily protein (.1) Potri.001G351300 [exp] 237 / 4e-75 AT3G01490 664 / 0.0 Protein kinase superfamily protein (.1) Potri.008G156000 [exp] 232 / 4e-73 AT3G22750 608 / 0.0 Protein kinase superfamily protein (.1) Potri.002G049700 [exp] 228 / 3e-71 AT3G22750 600 / 0.0 Protein kinase superfamily protein (.1) Potri.010G083500 [exp] 223 / 1e-69 AT3G22750 601 / 0.0 Protein kinase superfamily protein (.1) Potri.005G213200 [exp] 222 / 5e-69 AT3G22750 575 / 0.0 Protein kinase superfamily protein (.1) Potri.006G280000 [exp] 161 / 1e-45 AT4G31170 677 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.018G001800 [exp] 161 / 2e-45 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10030868 pacid=23155283 polypeptide=Lus10030868 locus=Lus10030868.g ID=Lus10030868.BGIv1.0 annot-version=v1.0 ATGGAATCGCAGATTATTAACCGCAAAGATAATGGCGAAGATGATGAAAGAAAACCCAGTGGTAGCTCCCACAACAACAGTGGCACTACTGATCTCGCTA CAAACAACGAGACGATGATCAGCTCGACGCCGAAGCGGCAGGTCACGGCCATGGTCGATCTCAAGAAGAACTTGGATCGACTCGATCGCCATCTCGATCG AGTTGGCCTCCTTTTGTCGAACAAGAATCTCGGCGGAGGAGGGACCGCCGAGACGACGATGACCACGGAGGCTGTGGTGGCGGAATGGGAGGTTGATTCC AGGAAACTTGTGCTCGGGAAGCTCATCGGCCGGGGAACCTACGCTGCTGTTTATCGTGGGACTTACGACGGCAAAGAAGTCGCAGGAGCTGTGATGTCAT CATCGGCACCGGATCTCAAGGGCTCGAATCACCGCCGATCCGGAAACCTCGATCCCCATCCAGATTGCTACTTGCTGACCCGGTACCACAGCGGCGGAAC CTTGAAATCGTACCTGGAGAAGTACAAGCGAGTGAGGAAGAAGCTCCCCCTCGACAAAGTCCTCAATCTCGCCGTACAGCTCGCAAAAGGAATCGATTAC CTCCACTCCCGGAAGGTGATCCACCGTGACGTCAAGCCGGAAAACGTCGTCCTCGAAGCCAACAGTAAGGCGCTGAAGATCATCGACTTCGGCGTCGCTA GGATGGAGCCTTCGAATCCGGCAGAGATGGCCGGCCAGATCGGGACGATCGGATACATGGCGCCGGAGGTCTTCGAGTCCCTGCCGTACGATCGGAAGTG CGACGTTTACAGCTTCGGGATCTCGTTGTGGGAGATCTACTTCTGCGATGCTTCGTTTGCCAATTACGGCTTCACTGAGCACACCTCTCCTTCCGTTTAC AAGAATGTGCGGCCGGAGATATCTAGAAACTGCCCGGAGAAGCTGGCGGATATAATGAAGCAATGCTGGGAGATAGAGCCGAGGAGGAGACCGGCCATGA GCGAAGTGGTATCGATGTTAGAGGAGATCAGTCCATGCGAGGTTCCGAGAAGGACAACACTCCTCTCGTCACAATGCTTCTGTATAAGGTCCTAA
AA sequence Show only first row Show all	>Lus10030868 pacid=23155283 polypeptide=Lus10030868 locus=Lus10030868.g ID=Lus10030868.BGIv1.0 annot-version=v1.0 MESQIINRKDNGEDDERKPSGSSHNNSGTTDLATNNETMISSTPKRQVTAMVDLKKNLDRLDRHLDRVGLLLSNKNLGGGGTAETTMTTEAVVAEWEVDS RKLVLGKLIGRGTYAAVYRGTYDGKEVAGAVMSSSAPDLKGSNHRRSGNLDPHPDCYLLTRYHSGGTLKSYLEKYKRVRKKLPLDKVLNLAVQLAKGIDY LHSRKVIHRDVKPENVVLEANSKALKIIDFGVARMEPSNPAEMAGQIGTIGYMAPEVFESLPYDRKCDVYSFGISLWEIYFCDASFANYGFTEHTSPSVY KNVRPEISRNCPEKLADIMKQCWEIEPRRRPAMSEVVSMLEEISPCEVPRRTTLLSSQCFCIRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01490			Protein kinase superfamily pro...		Lus10030868 [exp]	0	1
					Lus10028008 [exp]	1.7	0.6468
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10020867 [exp]	4.8	0.7011
					Lus10026869 [exp]	8.7	0.6491
					Lus10031737 [exp]	17.5	0.5847
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10028217 [exp]	23.2	0.5716
					Lus10011199 [exp]	24.0	0.5259
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10010341 [exp]	30.0	0.5410
					Lus10008920 [exp]	30.7	0.5742
AT4G31050			Biotin/lipoate A/B protein lig...		Lus10008181 [exp]	32.0	0.5398
					Lus10024618 [exp]	34.5	0.5376

Compare expression of checked genes

Lus10030868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.