Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10580 870 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54520 192 / 5e-55 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 116 / 1e-28 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 111 / 4e-27 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 104 / 3e-24 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 105 / 6e-24 PRL1 pleiotropic regulatory locus 1 (.1) AT4G02730 100 / 9e-23 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G16650 95 / 2e-20 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 89 / 4e-18 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 86 / 4e-17 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030620 [exp] 1041 / 0 AT1G10580 926 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014805 [exp] 164 / 3e-46 AT5G54520 403 / 2e-140 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 108 / 9e-26 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 106 / 4e-25 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 106 / 5e-25 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 103 / 4e-24 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006511 [exp] 100 / 3e-22 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10037500 [exp] 100 / 3e-22 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10002090 [exp] 96 / 1e-21 AT5G64730 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G064600 [exp] 891 / 0 AT1G10580 906 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G172800 [exp] 885 / 0 AT1G10580 874 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G410500 [exp] 184 / 3e-52 AT5G54520 510 / 5e-180 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 112 / 3e-27 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 109 / 2e-26 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 107 / 2e-25 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 105 / 2e-24 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G012800 [exp] 101 / 1e-22 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.007G009500 [exp] 98 / 2e-22 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G060500 [exp] 99 / 2e-21 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10030869 pacid=23155323 polypeptide=Lus10030869 locus=Lus10030869.g ID=Lus10030869.BGIv1.0 annot-version=v1.0 ATGGATCTTCTCCAATCAACCTACAACGACGGCGAAGACGTGGAAAACCCCACCTCATCTCCCGACGCCTCGCCGCCGCGTCTCCTTCAGGGCAGATCCG CCGCCCCGGCAGTCGACGACACCATGCTCGCCCTAACGGTAGCTCAGAAGAATCTATCCTCGTCAAAGCCAATCGACCCGACTCAGCACATCGTTTCCTT CAATCCAACCTACGACCAGCTCTGGACTCCGATAGTGGGCCCCTTGCACCCTTTCGCCAAGGACGGGATCGCTCAGGGGATGCGGAACCACAAGCTAGGG TTTGTCGAGGACGCCTCAATCGATGCGTTCACCTTCGACGAGCAGCACAACACGTTCCAGAAGTACGGATTCGCTGCAGATCCTTCGGGGACTGAGTACG TCGGCGATTTGAAGGCGCTGTCGAAGAACGGCGGGAATTCGGTGTATAGCATTCCGCAGCAGGAGCAGAAAAGGCGGCGGATCGAGAAGAAGAAACAGGA AAGGGAAGATGATGATGGAGAAGAAGAGAATGTCGATAGGGAGGAAGTTGAGAATCCGGCTACTGATTCGTGGCTGCTGAAGAACAAGAAGAGTCCATGG TCAGGGAAGAAGGAAGGATTGCAAGGGGAATTGACTGAGGAGCAGAAGAAGTACGCTGAAGAACACGCTAAGAAGAAGGAAGAGAAGGGAGCTAGCAGTG AAAAGGGAGAGGCTGTCGTTGAGAAAACTACTTTCCATGGGGACGAAGCGAAGGATTATCAAGGGAGGTCATGGATTGCTCCTCCTAAAGATGCGAAAGC TACGAATGACCATTGCTACATACCGAAGAAGTGGGTGCGAACATGGAGTGGGCATACCATGGGAGTTTCCGCGATCAGATTCTTCCCCAAGTATGGCCAT TTGATCCTCTCAGCTGGGATGGACACCAAGGTAAAGATATGGGACGTTGAGAACTCAGGTAAGTGTATGAGAACTTACATGGGTCATTCGAAAGCTGTTA GGGATATCTGTTTCACCAATGATGGCACTAAGTTTCTGTCTGCTGGGTATGATAAGAACATTAAGTATTGGGATACTGAGACCGGTCAGGTTATCTCGAC TTTCTCGACTGGAAAGCTTCCTTATGTAGTTAAGTTGAATCCCGACGAGGATAAACAGAACATACTTTTGGCTGGAATGAGTGATAAGAAGATTGTGCAG TGGGATATGAATTCTGGCCAGATTACTCAGGAGTATGATCAGCATTTAGGGGCTGTGAATACCATCACCTTCGTGGATAACAACAGGAGGTTTGTAACCT CTAGTGATGATAAGTCTCTTCGGGTTTGGGAATTCGGGATACCCGTTGTGATTAAGTACATCAGCGAGCCTCATATGCATTCGATGCCGTCGATAGCGGT TCATCCAAACTCGAACTGGCTGGCGGCCCAGAGTTTGGATAACCAGATCCTTATATACAGCACTAGGGAGAGGTTCCAGTTGAATAAGAAGAAGAGGTTT GCTGGACACATTGTGTCTGGATATGCGTGCCAGGTCAATTTCTCCCCCGATGGGCGGTTTGTGATGTCGGGCGACGGTGAAGGGAGGTGTTGGTTCTGGG ACTGGAAGAGCTGCAAAGTGTTCAGGACGTTGAAGTGCCATGACAAAGTCTGCATTGGTGCTGAGTGGCATCCGCTTGAGACGAGTAGAGTTGCTACCTG CAGTTGGGATGGCAAGATTCACTACTGGTAA
AA sequence Show only first row Show all	>Lus10030869 pacid=23155323 polypeptide=Lus10030869 locus=Lus10030869.g ID=Lus10030869.BGIv1.0 annot-version=v1.0 MDLLQSTYNDGEDVENPTSSPDASPPRLLQGRSAAPAVDDTMLALTVAQKNLSSSKPIDPTQHIVSFNPTYDQLWTPIVGPLHPFAKDGIAQGMRNHKLG FVEDASIDAFTFDEQHNTFQKYGFAADPSGTEYVGDLKALSKNGGNSVYSIPQQEQKRRRIEKKKQEREDDDGEEENVDREEVENPATDSWLLKNKKSPW SGKKEGLQGELTEEQKKYAEEHAKKKEEKGASSEKGEAVVEKTTFHGDEAKDYQGRSWIAPPKDAKATNDHCYIPKKWVRTWSGHTMGVSAIRFFPKYGH LILSAGMDTKVKIWDVENSGKCMRTYMGHSKAVRDICFTNDGTKFLSAGYDKNIKYWDTETGQVISTFSTGKLPYVVKLNPDEDKQNILLAGMSDKKIVQ WDMNSGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIAVHPNSNWLAAQSLDNQILIYSTRERFQLNKKKRF AGHIVSGYACQVNFSPDGRFVMSGDGEGRCWFWDWKSCKVFRTLKCHDKVCIGAEWHPLETSRVATCSWDGKIHYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030869 [exp]	0	1
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10035074 [exp]	1.0	0.8787
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10005506 [exp]	1.7	0.8562
AT5G67630			P-loop containing nucleoside t...		Lus10011551 [exp]	3.7	0.8777
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Lus10015692 [exp]	3.9	0.8493
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Lus10037698 [exp]	5.5	0.8220
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10029889 [exp]	5.7	0.8497
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10036947 [exp]	5.8	0.7688
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035215 [exp]	6.0	0.8491
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10028885 [exp]	7.7	0.7966
AT5G07900			Mitochondrial transcription te...		Lus10004957 [exp]	7.9	0.8313

Compare expression of checked genes

Lus10030869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.