Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23790 204 / 5e-59 Plant protein of unknown function (DUF936) (.1) AT1G70340 192 / 1e-54 Plant protein of unknown function (DUF936) (.1) AT1G08760 145 / 6e-37 Plant protein of unknown function (DUF936) (.1) AT4G13370 138 / 1e-34 Plant protein of unknown function (DUF936) (.1) AT3G14170 137 / 1e-34 Plant protein of unknown function (DUF936) (.1) AT3G19610 120 / 1e-28 Plant protein of unknown function (DUF936) (.1) AT2G31920 96 / 7e-21 Plant protein of unknown function (DUF936) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030619 [exp] 471 / 3e-162 AT1G23790 393 / 5e-132 Plant protein of unknown function (DUF936) (.1) Lus10041407 [exp] 317 / 1e-105 AT1G23790 135 / 7e-37 Plant protein of unknown function (DUF936) (.1) Lus10029158 [exp] 267 / 2e-82 AT1G70340 477 / 2e-164 Plant protein of unknown function (DUF936) (.1) Lus10013006 [exp] 255 / 2e-79 AT1G23790 300 / 6e-97 Plant protein of unknown function (DUF936) (.1) Lus10013007 [exp] 233 / 2e-73 AT1G23790 253 / 6e-82 Plant protein of unknown function (DUF936) (.1) Lus10026806 [exp] 148 / 9e-38 AT1G08760 732 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10036076 [exp] 145 / 8e-37 AT1G08760 731 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10008138 [exp] 139 / 4e-36 AT3G14170 350 / 8e-117 Plant protein of unknown function (DUF936) (.1) Lus10013177 [exp] 136 / 3e-34 AT3G14170 459 / 9e-158 Plant protein of unknown function (DUF936) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192300 [exp] 214 / 3e-62 AT1G23790 572 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.010G038600 [exp] 199 / 3e-58 AT1G23790 285 / 1e-91 Plant protein of unknown function (DUF936) (.1) Potri.007G131600 [exp] 145 / 9e-37 AT1G08760 674 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.017G026200 [exp] 144 / 1e-36 AT1G08760 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.003G070200 [exp] 139 / 2e-35 AT3G14170 458 / 2e-157 Plant protein of unknown function (DUF936) (.1) Potri.018G072500 [exp] 135 / 1e-33 AT4G13370 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.001G294600 [exp] 124 / 9e-30 AT3G19610 177 / 2e-47 Plant protein of unknown function (DUF936) (.1) Potri.009G024800 [exp] 114 / 8e-27 AT2G31920 293 / 1e-91 Plant protein of unknown function (DUF936) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06075 [flax] [poplar] DUF936 Plant protein of unknown function (DUF936)
Representative CDS sequence Show only first row Show all	>Lus10030870 pacid=23155383 polypeptide=Lus10030870 locus=Lus10030870.g ID=Lus10030870.BGIv1.0 annot-version=v1.0 ATGGCGGCTCTGACCCCGGGAGTACTGTTGAAGCTACTGGAAGCGACGGACAGAGGCAAGAAGCTGATGAGGGAGCACCGGAGCACGCTACTCCAGGTGA CGGATATCGTTCCTGTCGATCTCGACGAGAAGTCTCTGTTTCCGAAACAGGGATTCTACATCAAGGTTTCGGACTCTTTGCATTCGATCTACGTCTCGTT ACCTCCTGAGCAGGACGATTTGGTTATGAGCAACAAGATGCAGCTCGGTCAGTTCGTTTATGTCGACAGGTTGGAGCCTGGAACGCCTGTTCCGGTTGTG ATTGGAGCGAAGCCGATTCCTGGGAGACGACCGTTGACCCCGGAGCCGTTGATGGCGGGGTTGAGAAAAAAAACAGGGGAGAAGAAGGAATTTGCTCGAA TTGGTAATCGGAGAAGTTGTTGGGGGAAAATCGGAGGAGATACGAATCGGATGTGTTGTTATTCTCCGATGGCGTTGAAGAAGCGAGTTCCGCTTGATTC GGATCAGTGTTCTACTCTGGCGAAACAGAATGGCCGATCAATTTGCAACAAGGATCGATGTGAGCTGTCGAAAATGGCGAATAGTTCGAAGCCCGGTGAG AGACCATTGATAAGGAAGAGCCGGGTTGCTTCTTCTCCTTCTTTAGCTTCGAAATCTCCGAGGAGTCGAAGCGATCTCGGAGATGGAGACCGGCGCAGGA TCCCAGTTAGCCCCTCCATCTCATCTGCGAAGAAAAGCTCGAGTTTGACGAACGCGAAATCCGCTGTTGCTTCCACAAAATCGGGCAGTGATCGAGAAGT ACATGACTTGTTCAATCAGTCTAGTGATCCGGTCTCAGCCGGATCCGAAACCTGTCTGCCTGTGGATCTACCTGGAAAGCTAAGCAAGCTTGGAAAGGAA GCTTTGCAGCAGAGGGAAACTGCACAGAAGCTTGCTGAACAGGCCTTGAGAGAAGCTTCTGCTACCGAAACATTAATCCAATCTTTGAAGACGTTCTCAG ACATGACAAAATCAGCTAGCCCCGAATCTCCAGCCGGTTGCTTCGACAAGTTCCTCGAATTCCACGCCCGAATTTCGCAGTCCATCGACGAAATGAACTC CATCCAACCTGCTGCCACCAGCGTTCCCGCAACTCCAAAATCGAAACCTGGCGAAAAGGTTAAACAGATGAATCCAGAAGAAGCCTTCCCAGCTTTGAAC GAGCTCATTCGCAACTCGAAAAGACGAACATCATCCATCTACAAGCCCCCCACAGTCCAATGTAGCAATTCAAGGCTGTCGAGATCGTCGAATGATGAGA ACAAGAGACCAGAAACTACAATTGCTGCTGCTACTCCATCAGTTTCTGGCAGCTTGAGCAGGATGATTAAGCTGGGGAAGGATATCGAGATCGAAGCGGG GATCTGGTTCGTCGAGTTCGTAGAAAAAGCACTGGAAAGTGGGATGAAGAAATGTAGTAGGAAGGAAGTGCCGCAGTTGTTGATGATGAAGTTGTTCAAC TGGGTAGAGAATGAACAATGCAAAAGCAAAGTTCATCATCCCAAAGCAGCTCAGATTGCTAGGAGGTTAAGGATCAAGATGAAGAATCCTTGA
AA sequence Show only first row Show all	>Lus10030870 pacid=23155383 polypeptide=Lus10030870 locus=Lus10030870.g ID=Lus10030870.BGIv1.0 annot-version=v1.0 MAALTPGVLLKLLEATDRGKKLMREHRSTLLQVTDIVPVDLDEKSLFPKQGFYIKVSDSLHSIYVSLPPEQDDLVMSNKMQLGQFVYVDRLEPGTPVPVV IGAKPIPGRRPLTPEPLMAGLRKKTGEKKEFARIGNRRSCWGKIGGDTNRMCCYSPMALKKRVPLDSDQCSTLAKQNGRSICNKDRCELSKMANSSKPGE RPLIRKSRVASSPSLASKSPRSRSDLGDGDRRRIPVSPSISSAKKSSSLTNAKSAVASTKSGSDREVHDLFNQSSDPVSAGSETCLPVDLPGKLSKLGKE ALQQRETAQKLAEQALREASATETLIQSLKTFSDMTKSASPESPAGCFDKFLEFHARISQSIDEMNSIQPAATSVPATPKSKPGEKVKQMNPEEAFPALN ELIRNSKRRTSSIYKPPTVQCSNSRLSRSSNDENKRPETTIAAATPSVSGSLSRMIKLGKDIEIEAGIWFVEFVEKALESGMKKCSRKEVPQLLMMKLFN WVENEQCKSKVHHPKAAQIARRLRIKMKNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23790			Plant protein of unknown funct...		Lus10030870 [exp]	0	1
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10036912 [exp]	36.2	0.5893
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016498 [exp]	40.0	0.5761
AT4G19770			Glycosyl hydrolase family prot...		Lus10003408 [exp]	158.8	0.5201
AT2G20770		GCL2	GCR2-like 2 (.1)		Lus10031638 [exp]	174.6	0.5100
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024578 [exp]	179.3	0.5051
					Lus10012234 [exp]	208.5	0.5065

Compare expression of checked genes

Lus10030870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.