Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23750 226 / 1e-77 Nucleic acid-binding, OB-fold-like protein (.1) AT1G10590 211 / 8e-72 Nucleic acid-binding, OB-fold-like protein (.1.2.3) AT2G33845 187 / 7e-62 Nucleic acid-binding, OB-fold-like protein (.1) AT4G28440 168 / 1e-54 Nucleic acid-binding, OB-fold-like protein (.1) AT1G03810 159 / 3e-51 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030617 [exp] 280 / 4e-99 AT1G23750 229 / 7e-79 Nucleic acid-binding, OB-fold-like protein (.1) Lus10013010 [exp] 208 / 2e-70 AT1G23750 206 / 1e-69 Nucleic acid-binding, OB-fold-like protein (.1) Lus10029155 [exp] 207 / 5e-70 AT1G23750 206 / 1e-69 Nucleic acid-binding, OB-fold-like protein (.1) Lus10015411 [exp] 171 / 2e-55 AT2G33845 186 / 4e-61 Nucleic acid-binding, OB-fold-like protein (.1) Lus10002172 [exp] 169 / 5e-55 AT2G33845 189 / 1e-62 Nucleic acid-binding, OB-fold-like protein (.1) Lus10013989 [exp] 169 / 2e-54 AT4G28440 186 / 3e-61 Nucleic acid-binding, OB-fold-like protein (.1) Lus10039889 [exp] 164 / 5e-53 AT2G33845 185 / 1e-60 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G041000 [exp] 242 / 4e-84 AT1G23750 234 / 1e-80 Nucleic acid-binding, OB-fold-like protein (.1) Potri.008G189900 [exp] 239 / 8e-83 AT1G23750 239 / 9e-83 Nucleic acid-binding, OB-fold-like protein (.1) Potri.001G396100 [exp] 203 / 2e-68 AT1G23750 194 / 5e-65 Nucleic acid-binding, OB-fold-like protein (.1) Potri.011G114800 [exp] 202 / 4e-68 AT2G33845 214 / 3e-72 Nucleic acid-binding, OB-fold-like protein (.1) Potri.007G137600 [exp] 171 / 6e-56 AT4G28440 193 / 2e-64 Nucleic acid-binding, OB-fold-like protein (.1) Potri.017G014400 [exp] 166 / 1e-53 AT4G28440 194 / 9e-65 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030871 pacid=23155189 polypeptide=Lus10030871 locus=Lus10030871.g ID=Lus10030871.BGIv1.0 annot-version=v1.0 ATGGCAGATGCAAAACCAGGATTGAGGAAGCCAGTTTTCACCAAGGTTGAGCAGCTTCGTCCAGGGACCAGCGGTCATACCCTAACTGTAAAGGTTGTCA ACACGAAAATCGTGTTGCAGAAGGGTCGTGTCGACGGTCCTCAAGTGCGCCAAATGCGAATTGCTGAATGTATGGTGGGAGACGACACCGGGATTATTAT TTTCACTGCAAGGAATGATCAAGTGGACCTGATGAAAGAAGGCAACACAGTGACCCTCCGCAACGCGAAGATCGACATGTTCAAAGGATCAATGAGGCTT GCAGTGGACAAGTGGGGACGTGTCGAAGTCGAAGAGAAAGATCCAGCAACTTTCACAGTCAAGGTAGAGAACAACCTCTCGCTGATCGAGTACGAACTCG TCAACGTTGTGGAAGAGTGA
AA sequence Show only first row Show all	>Lus10030871 pacid=23155189 polypeptide=Lus10030871 locus=Lus10030871.g ID=Lus10030871.BGIv1.0 annot-version=v1.0 MADAKPGLRKPVFTKVEQLRPGTSGHTLTVKVVNTKIVLQKGRVDGPQVRQMRIAECMVGDDTGIIIFTARNDQVDLMKEGNTVTLRNAKIDMFKGSMRL AVDKWGRVEVEEKDPATFTVKVENNLSLIEYELVNVVEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10030871 [exp]	0	1
AT5G25450			Cytochrome bd ubiquinol oxidas...		Lus10008081 [exp]	1.4	0.9142
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Lus10004213 [exp]	2.4	0.8714
AT5G25450			Cytochrome bd ubiquinol oxidas...		Lus10013113 [exp]	2.4	0.8831
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10021852 [exp]	5.9	0.8256
AT5G54750			Transport protein particle (TR...		Lus10028720 [exp]	7.5	0.8178
AT2G27190		ATPAP12	ARABIDOPSIS THALIANA PURPLE AC...		Lus10006126 [exp]	7.9	0.7726
AT5G56600		PRF3, PFN3	profilin 3 (.1.2)		Lus10043040 [exp]	8.4	0.8107
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10025319 [exp]	9.5	0.8051
AT2G41475			Embryo-specific protein 3, (AT...		Lus10019416 [exp]	9.9	0.8110
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10031084 [exp]	10.7	0.7889

Compare expression of checked genes

Lus10030871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.