Plant FIBer expression Database

Lus10030872 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G10310 283 / 8e-89 ATHKT1, HKT1 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030616
[exp]
818 / 0 AT4G10310 399 / 4e-134 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
Lus10040598
[exp]
344 / 5e-112 AT4G10310 374 / 3e-124 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
Lus10026948
[exp]
291 / 3e-92 AT4G10310 306 / 5e-99 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G132200
[exp]
347 / 2e-113 AT4G10310 413 / 9e-140 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
Potri.018G147501
[exp]
151 / 5e-43 AT4G10310 150 / 2e-43 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0030 Ion_channel PF02386 TrkH Cation transport protein
Representative CDS sequence
>Lus10030872 pacid=23155387 polypeptide=Lus10030872 locus=Lus10030872.g ID=Lus10030872.BGIv1.0 annot-version=v1.0
ATGGAGACCAAGTTTAGATGTTTCACCAAGAGAGTAATGAACTCTTTCCACCTTAGCCGCCGATCGACCTGCATCCACAGGTTCCTCGCCGTCCGAGTCA
ACTCGGTCTTCACTCAGCTCTGCTATTTCCTCTCCATCTCCTTCGTCGGCTACTCCGTTCTCAAGGCCATCGACACACGCCCCGGCGCCGCCGTCCCCCG
GAGCGTCGACTTCTTATTCACCGCCGTCTCCGCCGCTACCGTCTCCAGCATGTCAGCGGTCGAAATGGAGGTGTTTTCCGACGGCCAGCTCCTCTTCATG
ACCCTCCTCATGTTCGCCGGCGGTGAGGTGTTCGTCTCCATGGTTGAACTCATGGTCAGAACTTACCGCATGAAGTCGGCGGCGGCGGCGACTTATTCGG
GGGAAATGATTAGTGGTGAAATTGAAGTGGACCCCACCTTGACTCCACGTGGTCACGAGGTTGAATTAGTTGTGGTCCCACCAACACATGTCCCGACGGT
GGAGGAATTGGAAAGAGGAATTGATCATGTTTGCTCGGTTCAACCCATGAAGTGGAAATCAATTCGGTTTTTGAGTTGGGTGGTGATGGCCTTTCTCGTA
TCTATTCACATCGCGGGTGTTTCTTTACTGTCGTTGTACATCGCGCTCGTTTCAAGCGCAGGGAATATTTTGAGGGAGAAAGGATTGAAGAGTTTTACTT
TCTCCATCTTCACAATCGTATCTACGTTCTCCAGCTGTGGATTCGTTCCCACGAACGAGAACATGATCGTCTTCAGAAAGCAACCCGTAATGTTGCTTAT
TCTTATCCCTCAGGTCCTCCTAGGTAACACTTTGTTTCCGCCTGGCCTCCGTTTCTGCGTCTGGCTCTTCGGCAAGTTGTCTAAAAGATACCGTCATTAT
AGCACGTACCTACTCAGCAACACAAAGGAAGTAGGATTCTACCATTTTTTACCGAGAAGACAATCGTGGTACCTTACCACGACGGTAGTGGGGTTTGTGG
GGATCAAACTCGTGATGTTCTGCGCCCTGGATTGGCAATCGGAAGGGCTAAACGAGATGAACCCATTGCAAAAAATTGTTGGGGGTCTGTTCGTGACGGT
AAACGCGCGACACTCTGGGGAGACCATCGTGGATTTGACCACCATCTCACCGGCCGTTCTCGTGGTGTTGGTAGTTATGATGTATCTTCCTCCGTACACA
TCTTTCCTTCCTGCAAAGGCACGAGACGAAGATGAAGAAGAAGACGACGGCAACAATTTTGTAGCAGGGGAAAACAACAATGACACAACAACCGACGTTA
GAAATAGACAAAGAAGAAGAGACAACAAGTCGATCAATAGCAACAACTTGTTGGAGACCGTGATATTCTCGCAGCTCTCGTACTTGGCAGTGTTCGTCGT
GATCATATGCATCGCCGAGAGGAAAAACATGAAGGCTGATCCCCTTAACTTCAACGTCTTCAACGTCGTCTTCGAAGTCGTCAGTGCATATGGGAACGTG
GGGTTTTCGATGGGGTACAGTTGTAAAAGACGGATAAACCCCGTCGGGAGTTGCGAGGACAAGTGGTACGGTTTCGCCGGGAAATGGAGCGACGAGGGCA
AAATCGTCCTGATCGTGGTTATGTTCTTTGGACGGCTCAAGAAGTTCAACTTGGACGGTGGCAAGTCTTGGAAGCTCCAGTGA
AA sequence
>Lus10030872 pacid=23155387 polypeptide=Lus10030872 locus=Lus10030872.g ID=Lus10030872.BGIv1.0 annot-version=v1.0
METKFRCFTKRVMNSFHLSRRSTCIHRFLAVRVNSVFTQLCYFLSISFVGYSVLKAIDTRPGAAVPRSVDFLFTAVSAATVSSMSAVEMEVFSDGQLLFM
TLLMFAGGEVFVSMVELMVRTYRMKSAAAATYSGEMISGEIEVDPTLTPRGHEVELVVVPPTHVPTVEELERGIDHVCSVQPMKWKSIRFLSWVVMAFLV
SIHIAGVSLLSLYIALVSSAGNILREKGLKSFTFSIFTIVSTFSSCGFVPTNENMIVFRKQPVMLLILIPQVLLGNTLFPPGLRFCVWLFGKLSKRYRHY
STYLLSNTKEVGFYHFLPRRQSWYLTTTVVGFVGIKLVMFCALDWQSEGLNEMNPLQKIVGGLFVTVNARHSGETIVDLTTISPAVLVVLVVMMYLPPYT
SFLPAKARDEDEEEDDGNNFVAGENNNDTTTDVRNRQRRRDNKSINSNNLLETVIFSQLSYLAVFVVIICIAERKNMKADPLNFNVFNVVFEVVSAYGNV
GFSMGYSCKRRINPVGSCEDKWYGFAGKWSDEGKIVLIVVMFFGRLKKFNLDGGKSWKLQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G10310 ATHKT1, HKT1 high-affinity K+ transporter 1... Lus10030872
[exp]
0 1
AT4G10310 ATHKT1, HKT1 high-affinity K+ transporter 1... Lus10030616
[exp]
1.7 0.9304
AT4G24130 Protein of unknown function, D... Lus10001674
[exp]
2.0 0.9283
Lus10028109
[exp]
2.4 0.9005
AT5G52260 MYB ATMYB19 myb domain protein 19 (.1) Lus10005740
[exp]
4.0 0.8821
AT5G16970 AT-AER alkenal reductase (.1) Lus10035274
[exp]
4.5 0.9208
AT1G19630 CYP722A1 "cytochrome P450, family 722, ... Lus10014285
[exp]
4.9 0.9216
AT5G42170 SGNH hydrolase-type esterase s... Lus10003720
[exp]
5.4 0.8445
AT5G19530 ACL5 ACAULIS 5, S-adenosyl-L-methio... Lus10000469
[exp]
6.3 0.9184
AT1G05675 UDP-Glycosyltransferase superf... Lus10024118
[exp]
8.1 0.8736
AT4G31500 SUR2, RNT1, RED... SUPERROOT 2, RUNT 1, RED ELONG... Lus10033172
[exp]
9.4 0.8529

Lus10030872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.