Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14740 320 / 7e-111 BETACA2, CA18, CA2 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) AT1G70410 317 / 1e-109 ATBCA4 beta carbonic anhydrase 4 (.1.2.3) AT3G01500 305 / 7e-105 SABP3, ATBCA1, CA1, ATSABP3 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) AT1G23730 295 / 2e-101 ATBCA3 BETA CARBONIC ANHYDRASE 3, beta carbonic anhydrase 3 (.1) AT4G33580 161 / 5e-48 ATBCA5 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) AT1G58180 134 / 3e-38 ATBCA6 A. THALIANA BETA CARBONIC ANHYDRASE 6, beta carbonic anhydrase 6 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030614 [exp] 469 / 9e-170 AT1G70410 351 / 6e-123 beta carbonic anhydrase 4 (.1.2.3) Lus10022235 [exp] 305 / 1e-103 AT3G01500 460 / 3e-163 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) Lus10016443 [exp] 234 / 2e-76 AT5G14740 298 / 4e-101 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Lus10008780 [exp] 218 / 1e-69 AT3G01500 357 / 1e-122 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) Lus10015833 [exp] 162 / 1e-47 AT4G33580 306 / 2e-103 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Lus10020415 [exp] 158 / 8e-45 AT1G15820 379 / 9e-130 light harvesting complex photosystem II subunit 6 (.1) Lus10009274 [exp] 148 / 6e-43 AT4G33580 281 / 2e-94 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Lus10015892 [exp] 122 / 2e-33 AT4G33580 205 / 3e-65 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G041100 [exp] 377 / 3e-133 AT5G14740 392 / 4e-138 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.008G189800 [exp] 350 / 9e-123 AT5G14740 375 / 5e-133 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.001G348900 [exp] 322 / 1e-110 AT3G01500 429 / 2e-151 ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, BETA CARBONIC ANHYDRASE 1, carbonic anhydrase 1 (.1.2.3) Potri.015G076000 [exp] 258 / 1e-86 AT5G14740 303 / 4e-104 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.015G075902 [exp] 258 / 2e-86 AT5G14740 304 / 1e-104 CARBONIC ANHYDRASE 18, BETA CARBONIC ANHYDRASE 2, carbonic anhydrase 2 (.1.2.3.4.5) Potri.017G044700 [exp] 202 / 8e-64 AT4G33580 339 / 8e-117 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Potri.007G114600 [exp] 186 / 9e-58 AT4G33580 335 / 4e-115 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2) Potri.005G156600 [exp] 166 / 9e-50 AT4G33580 303 / 1e-102 A. THALIANA BETA CARBONIC ANHYDRASE 5, beta carbonic anhydrase 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00484 [flax] [poplar] Pro_CA Carbonic anhydrase
Representative CDS sequence Show only first row Show all	>Lus10030874 pacid=23155348 polypeptide=Lus10030874 locus=Lus10030874.g ID=Lus10030874.BGIv1.0 annot-version=v1.0 ATGGCGGAGCAATCGTACCAGGAGGCCATCGATGGATTGACGAAGCTGCTCAGTGAGAAGGCTGATCTCGGGAGCGTCGCGGCCGCAAAAATCAAGCAGT TGACGGCGGAGCTGGAGGGTGCCGTCGGCGGCAAGGACTCCGACCCGGTACAGAGGCTGAAGACTGGGTTCCATACGTTCAAAACAGAGAAATATGAGAA GAATCCTGATCTTTATGAACCTCTCAAGAAAGGGCAATGGCCTAAGTTCATGGTATTCGCATGCTCGGATTCTCGAGTGTGCCCTTCCCACATCTTGGAC TTCAAACCCGGGGAGGCTTTCGTAGTGAGGAACATTGCCAACATGGTTCCACCTTACGACCAGACGAAGTACTCCGGAGTGGGGGCAGCCGTTGAATATG CGGTAGTTCATTTGAAGGTGGAGAACATCGTAGTGATTGGACACAGCCGGTGCGGAGGGATAAAGGGGCTGATGAGTATCCCAGATGACGGCACCACAGC AAGGCAAATGTTATTCTGTTTTTGGCTCAAAACCAATGGTCTGCAGAGCCTTACTGGTGACTTCATTGAGCCATGGGTGAAAATCTGCTCCACTGCAAGC TCCAAGGAGGCTGTGAATGTGTCGCTGGGGAACCTGTTGACGTATCCGTTCGTGAGAGATGCTGTTGTGAACAAGAAGCTTGCTCTGAAAGGTGCACATT ACGATTTTGTCGATGGTTGCTTCCAGCTATGGAACCTTGACTTCCAGATTTCTCCTGCGGTCTCTGCTTGA
AA sequence Show only first row Show all	>Lus10030874 pacid=23155348 polypeptide=Lus10030874 locus=Lus10030874.g ID=Lus10030874.BGIv1.0 annot-version=v1.0 MAEQSYQEAIDGLTKLLSEKADLGSVAAAKIKQLTAELEGAVGGKDSDPVQRLKTGFHTFKTEKYEKNPDLYEPLKKGQWPKFMVFACSDSRVCPSHILD FKPGEAFVVRNIANMVPPYDQTKYSGVGAAVEYAVVHLKVENIVVIGHSRCGGIKGLMSIPDDGTTARQMLFCFWLKTNGLQSLTGDFIEPWVKICSTAS SKEAVNVSLGNLLTYPFVRDAVVNKKLALKGAHYDFVDGCFQLWNLDFQISPAVSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14740		BETACA2, CA18, ...	CARBONIC ANHYDRASE 18, BETA CA...		Lus10030874 [exp]	0	1
AT5G63905			unknown protein		Lus10018677 [exp]	1.4	0.8370
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10005095 [exp]	8.5	0.6699
AT1G27350			Ribosome associated membrane p...		Lus10037031 [exp]	9.2	0.7505
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10004005 [exp]	11.5	0.7411
AT3G14470			NB-ARC domain-containing disea...		Lus10000417 [exp]	12.2	0.7338
AT1G76570			Chlorophyll A-B binding family...		Lus10015235 [exp]	12.4	0.7745
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043196 [exp]	15.1	0.7545
AT2G27830			unknown protein		Lus10020544 [exp]	15.2	0.7338
AT3G04310			unknown protein		Lus10032791 [exp]	15.9	0.6639
AT2G37975			Yos1-like protein (.1)		Lus10000226 [exp]	18.7	0.7462

Compare expression of checked genes

Lus10030874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.