Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10600 311 / 2e-108 AMSH2 associated molecule with the SH3 domain of STAM 2 (.1.2.3) AT1G48790 254 / 3e-82 AMSH1 associated molecule with the SH3 domain of STAM 1 (.1) AT4G16144 251 / 5e-81 AMSH3 associated molecule with the SH3 domain of STAM 3 (.1) AT5G23540 51 / 2e-07 Mov34/MPN/PAD-1 family protein (.1.2) AT1G22920 44 / 6e-05 CSN5A, JAB1, AJH1 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2) AT1G71230 40 / 0.0009 CSN5B, AJH2 COP9-signalosome 5B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030613 [exp] 434 / 4e-156 AT1G10600 253 / 5e-85 associated molecule with the SH3 domain of STAM 2 (.1.2.3) Lus10036454 [exp] 246 / 8e-79 AT4G16144 645 / 0.0 associated molecule with the SH3 domain of STAM 3 (.1) Lus10009006 [exp] 241 / 3e-76 AT1G48790 589 / 0.0 associated molecule with the SH3 domain of STAM 1 (.1) Lus10009634 [exp] 167 / 1e-48 AT1G48790 536 / 0.0 associated molecule with the SH3 domain of STAM 1 (.1) Lus10035470 [exp] 57 / 4e-09 AT5G23540 601 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10031085 [exp] 56 / 4e-09 AT5G23540 599 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10042663 [exp] 53 / 5e-08 AT5G23540 616 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10021746 [exp] 53 / 6e-08 AT5G23540 618 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10020149 [exp] 42 / 0.0004 AT2G07560 469 / 1e-155 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G041200 [exp] 310 / 5e-108 AT1G10600 256 / 3e-87 associated molecule with the SH3 domain of STAM 2 (.1.2.3) Potri.010G141100 [exp] 254 / 3e-82 AT4G16144 697 / 0.0 associated molecule with the SH3 domain of STAM 3 (.1) Potri.015G045800 [exp] 245 / 2e-78 AT1G48790 581 / 0.0 associated molecule with the SH3 domain of STAM 1 (.1) Potri.002G127900 [exp] 55 / 1e-08 AT5G23540 567 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Potri.014G032900 [exp] 55 / 1e-08 AT5G23540 563 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Potri.018G006100 [exp] 42 / 0.0003 AT1G22920 589 / 0.0 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2) Potri.006G275100 [exp] 41 / 0.0005 AT1G22920 565 / 0.0 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [flax] [poplar] JAB PF01398 [flax] [poplar] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Representative CDS sequence Show only first row Show all	>Lus10030875 pacid=23155428 polypeptide=Lus10030875 locus=Lus10030875.g ID=Lus10030875.BGIv1.0 annot-version=v1.0 ATGGATCCTGAATCTTGCTTATCCACACACAAATCAAGGCCTGACCTTTTCCACCACATGAAAGTTCATGCTGTTACTCAATCCTCTCCTTCCCCGGTAC TCTCATGCGTCGAGAAAGCTCCCAGATGTGCTCAGATTTCACTGGTTCCAGCTGCTGATGTGGATGAATCTTCAAGCAACGAGCAAACAGGACCGGATTT GCTTCGCGAAGTTCACATATCAGCACGGTTGATGGAGGATTTCCTTGAGCTGGCTAAAGAAAATACAGAGAAGGATCTTGAGACATGCGGGGTACTTGGT GCTTTCCTTGAAAGCGGGACGTATTACGTGACAACTCTAATAATACCCAAGCAAGTGGCCACTTCCAACTCTTGTGAAGCTAAGAGGGAGGAGGAGTACT TTACGATACAGAATGACCGGTCTCTTTCCCCCGTTGGATGGATTCACACACATCCTTCTCAGAGTTGCTTCATGTCATCAATTGATCTGCACACTCATTA CTCATATCAGGCTATGATACCAGAGGCATTCGCAATCGTCATGGCTCCAACCGATACATCAAGAAGTTACGGTATATTCCGGATATCAGATCCTGGAGGC ATGAGCGTGCTCAGACAGTGTCAAGAGACAGGATTCCACACTCACGACGAACCAGCAGACGGGACCCCAATCTACCAAAACTGCTCTAACGTCTACACCA ACTCCAATCTGAGGTTCGAAATCTTCGACTTGCGATAA
AA sequence Show only first row Show all	>Lus10030875 pacid=23155428 polypeptide=Lus10030875 locus=Lus10030875.g ID=Lus10030875.BGIv1.0 annot-version=v1.0 MDPESCLSTHKSRPDLFHHMKVHAVTQSSPSPVLSCVEKAPRCAQISLVPAADVDESSSNEQTGPDLLREVHISARLMEDFLELAKENTEKDLETCGVLG AFLESGTYYVTTLIIPKQVATSNSCEAKREEEYFTIQNDRSLSPVGWIHTHPSQSCFMSSIDLHTHYSYQAMIPEAFAIVMAPTDTSRSYGIFRISDPGG MSVLRQCQETGFHTHDEPADGTPIYQNCSNVYTNSNLRFEIFDLR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10600		AMSH2	associated molecule with the S...		Lus10030875 [exp]	0	1
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Lus10013401 [exp]	1.0	0.9736
AT5G27830			unknown protein		Lus10029881 [exp]	2.4	0.9570
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Lus10009909 [exp]	4.9	0.9380
					Lus10010883 [exp]	5.1	0.9242
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10042623 [exp]	6.2	0.9389
AT4G32190			Myosin heavy chain-related pro...		Lus10006190 [exp]	6.9	0.9357
AT3G45300		IVDH, ATIVD, IV...	isovaleryl-CoA-dehydrogenase (...		Lus10036122 [exp]	7.7	0.9358
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Lus10019074 [exp]	7.9	0.9348
AT4G27780		ACBP2	acyl-CoA binding protein 2 (.1...		Lus10022382 [exp]	8.0	0.9335
AT4G28240			Wound-responsive family protei...		Lus10031617 [exp]	8.5	0.9106

Compare expression of checked genes

Lus10030875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.