Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70420 133 / 2e-37 Protein of unknown function (DUF1645) (.1) AT1G23710 128 / 3e-35 Protein of unknown function (DUF1645) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030612 [exp] 337 / 2e-117 AT1G70420 155 / 8e-46 Protein of unknown function (DUF1645) (.1) Lus10013011 [exp] 183 / 6e-57 AT1G70420 159 / 1e-47 Protein of unknown function (DUF1645) (.1) Lus10029153 [exp] 182 / 3e-56 AT1G70420 159 / 1e-47 Protein of unknown function (DUF1645) (.1) Lus10002380 [exp] 45 / 2e-05 AT1G70420 78 / 1e-16 Protein of unknown function (DUF1645) (.1) Lus10042116 [exp] 44 / 3e-05 AT1G70420 61 / 2e-11 Protein of unknown function (DUF1645) (.1) Lus10014541 [exp] 44 / 5e-05 AT3G27880 120 / 6e-33 Protein of unknown function (DUF1645) (.1) Lus10032145 [exp] 40 / 0.0006 AT3G27880 81 / 4e-19 Protein of unknown function (DUF1645) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G041300 [exp] 109 / 1e-28 AT1G23710 169 / 5e-51 Protein of unknown function (DUF1645) (.1) Potri.012G081000 [exp] 79 / 1e-16 AT1G23710 104 / 5e-26 Protein of unknown function (DUF1645) (.1) Potri.015G076400 [exp] 76 / 1e-15 AT1G23710 91 / 6e-21 Protein of unknown function (DUF1645) (.1) Potri.009G102101 [exp] 58 / 1e-09 AT1G23710 74 / 4e-15 Protein of unknown function (DUF1645) (.1) Potri.008G156901 [exp] 54 / 1e-08 AT1G23710 57 / 1e-09 Protein of unknown function (DUF1645) (.1) Potri.018G096600 [exp] 53 / 4e-08 AT1G23710 76 / 2e-16 Protein of unknown function (DUF1645) (.1) Potri.018G096400 [exp] 42 / 8e-05 AT1G23710 58 / 9e-11 Protein of unknown function (DUF1645) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07816 [flax] [poplar] DUF1645 Protein of unknown function (DUF1645)
Representative CDS sequence Show only first row Show all	>Lus10030876 pacid=23155227 polypeptide=Lus10030876 locus=Lus10030876.g ID=Lus10030876.BGIv1.0 annot-version=v1.0 ATGACTTCAATCGTAGCTCCGATTCCCAGCTGCTCCGACGCCGACAGCAAGTTCGTCAAGGAGTTCTGGCTCAAGCTCAAGCTCATCGAGGACAACGAAG AAGTAGTTGTAGAGGAAGAAGAAAAGGAAGAAAAAGAAGAAGAATTGCATGAAGAATCGCATAACCCAGATGGGGAAGACGACGAGTCGGAGCTCGAGGA TGACGACGAATTCAGTTTCGCCAGAGCATTCGGGGACGGAGACATAATCCCCGCCGACGAGGCATTCCTCAACGGCCAGATCCGGCCGGTCTTCCCTCTC TTCAACCGCGATCTCCTCCTCGGAGAGGAGGGGATCCAGCAGCTGCCGCAGGAAGGGTCGTACTGCGAATGGGGAGGGAAAACAGAGTCGTCGTCGTCTG AGACGGCGACGGAGGCGGCGTTGCCAGAGTTTGTATCCAAGAAGAGCAACTCCACCGGGTTTTCCAAGCTAAGGAGGTTTAGAGAGCTTGTGTTGAGGAG TAACAGCGACGGGAAGGATAAATTCGTCTTTCTACATCATCACCACCACCACCCTAGTAGTAGTAAAGGGGGGCCTGTTCCCGCCGCTGGTGATGAAGGA AAGAAGTTGGCTTCGCCGCCGGAGAATAAAAGCGCGGTGAAGTTGGTGATGAAGAAGAAGAAGGGCGAAACGACGTCGGCGTTCGAGAAGATGTACGCGA GGAGGAAGAAGGAAGAAGGGAGTAAACAGAGAATGTCGTATCTTCCGTACAAGCAAGTCGGATTCTTTGCCAGCGTTAATGGCTTCAGCAAGAATGTTCA TCCTTACTGA
AA sequence Show only first row Show all	>Lus10030876 pacid=23155227 polypeptide=Lus10030876 locus=Lus10030876.g ID=Lus10030876.BGIv1.0 annot-version=v1.0 MTSIVAPIPSCSDADSKFVKEFWLKLKLIEDNEEVVVEEEEKEEKEEELHEESHNPDGEDDESELEDDDEFSFARAFGDGDIIPADEAFLNGQIRPVFPL FNRDLLLGEEGIQQLPQEGSYCEWGGKTESSSSETATEAALPEFVSKKSNSTGFSKLRRFRELVLRSNSDGKDKFVFLHHHHHHPSSSKGGPVPAAGDEG KKLASPPENKSAVKLVMKKKKGETTSAFEKMYARRKKEEGSKQRMSYLPYKQVGFFASVNGFSKNVHPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70420			Protein of unknown function (D...		Lus10030876 [exp]	0	1
AT5G01740			Nuclear transport factor 2 (NT...		Lus10017421 [exp]	3.2	0.8607
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10014988 [exp]	5.7	0.8412
AT5G22390			Protein of unknown function (D...		Lus10020626 [exp]	11.0	0.8582
AT3G62550			Adenine nucleotide alpha hydro...		Lus10025033 [exp]	13.0	0.8632
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Lus10009863 [exp]	15.9	0.8095
AT2G24860			DnaJ/Hsp40 cysteine-rich domai...		Lus10020093 [exp]	17.2	0.8217
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10019136 [exp]	26.8	0.8646
					Lus10028245 [exp]	27.7	0.7850
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10036931 [exp]	33.0	0.8494
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10024643 [exp]	40.2	0.8246

Compare expression of checked genes

Lus10030876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.