Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23550 219 / 3e-69 SRO2 similar to RCD one 2 (.1) AT1G70440 200 / 7e-62 SRO3 similar to RCD one 3 (.1) AT5G62520 176 / 2e-52 SRO5 similar to RCD one 5 (.1.2) AT3G47720 142 / 1e-39 SRO4 similar to RCD one 4 (.1) AT1G32230 140 / 6e-37 ATP8, CEO1, RCD1, AtRCD1 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3) AT2G35510 101 / 2e-23 SRO1 similar to RCD one 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030611 [exp] 593 / 0 AT1G23550 219 / 7e-69 similar to RCD one 2 (.1) Lus10029152 [exp] 337 / 1e-114 AT1G23550 219 / 4e-69 similar to RCD one 2 (.1) Lus10013012 [exp] 330 / 7e-112 AT1G23550 218 / 1e-68 similar to RCD one 2 (.1) Lus10030991 [exp] 108 / 1e-25 AT1G32230 376 / 2e-123 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3) Lus10035390 [exp] 96 / 1e-21 AT2G35510 352 / 5e-114 similar to RCD one 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G231100 [exp] 225 / 4e-71 AT1G23550 207 / 2e-64 similar to RCD one 2 (.1) Potri.012G081100 [exp] 225 / 8e-71 AT5G62520 243 / 2e-78 similar to RCD one 5 (.1.2) Potri.015G076500 [exp] 218 / 8e-68 AT5G62520 251 / 2e-81 similar to RCD one 5 (.1.2) Potri.006G231500 [exp] 205 / 2e-63 AT1G23550 219 / 2e-69 similar to RCD one 2 (.1) Potri.018G055100 [exp] 203 / 6e-63 AT1G23550 208 / 5e-65 similar to RCD one 2 (.1) Potri.006G231600 [exp] 201 / 8e-62 AT1G23550 185 / 6e-56 similar to RCD one 2 (.1) Potri.002G112300 [exp] 148 / 2e-40 AT2G35510 185 / 4e-52 similar to RCD one 1 (.1) Potri.003G096700 [exp] 126 / 5e-32 AT1G32230 451 / 4e-152 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3) Potri.001G137200 [exp] 124 / 2e-31 AT1G32230 479 / 6e-163 RADICAL-INDUCED CELL DEATH1, ARABIDOPSIS THALIANA P8 \(INTERACTING PROTEIN\), WWE protein-protein interaction domain protein family (.1.2.3) Potri.005G149701 [exp] 81 / 8e-19 AT2G35510 81 / 4e-19 similar to RCD one 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12174 [flax] [poplar] RST RCD1-SRO-TAF4 (RST) plant domain
Representative CDS sequence Show only first row Show all	>Lus10030878 pacid=23155331 polypeptide=Lus10030878 locus=Lus10030878.g ID=Lus10030878.BGIv1.0 annot-version=v1.0 ATGGTTGCCCCAGCGATGTACGAGGAGGAGGAGCAAACCGCGAGTTCGATAGTCGAGGATGACGATATCTTGAAGCCGGATTACGACTCCGACGAGATAA CCCCCGAGTCTCTCCATGCCAAAGGAGTCCGGGGTGGCTTTGAGGATTTTATACGAGTCGGATTCGCTCCTCTGCCGGAGGATACTGTACAGCACTCGAG GATCGCGAAGCAGTTTCGCGACGGGTTAGGGAAACGCGCTGCCGGTGATGATGCTGTGACGGTGACGGCGGTGCATCGGAATCTGATATCCTGGCCGACC GCCAGGGCTAGGTTCATCTCGTTTCGGATTCACGAGAAGGCGGTGGCGGATAAGTGCGGCGGCGTTTCCAACGCTCGGTTCGCTTGGTACGGCGGCTCTA AGGATGAGATCTGCAAGATCTTGAGCTTCGGGTTCAGCCGATGCACCGGCGGCGGAGGAGGATGGAACGGTCAACAAGTTACACACGGCGTCGGCGTTCA TCTATCGCCAATTGCGTTCCCAGCTGATTGCTTGGAAACGGCGACAGTTGACCAGCACGGGACGAAGCACTTGCTTCTCTGCCGCGTAATACTCGGTAAA ATGGAAGCCATTCCTGCTGGCTCCAGCCAATCAACTCCGAGCTCCGTTCAATTCGATTCTGGAGTTGACGATTTGGCCAATCCGAGGAGATTCGTCGTGT GGAGTTCGTTCATGAACTCCCACATTTTCCCAGTATGCGTTGTCAGCTTCAGGGATCCAGGTAATGGCATTGAGTCGATAAGAGAGGCGCCACCATTGGG GGATGGTTCTAGGAGGCCCAGATCCCCCTGGATGAGCTTTCCAGCTCTGTTGAGCGTCCTCTCCGAGGTGTTGGATCGACCTGCTAAGTTGATGATTTCG AAGAGTTACGATGACTTCAAGCGACAGAGGATTACCAGAGAGCAATTGGTGAGAAAATTAAGGCAGCTCGTTGGGGATGAACTGTTGGCTTCAGTAATTA AATCTAAGGTATTATTTTTTCCCAGTTCTGTAATAGCTTTCAAGTTGTAG
AA sequence Show only first row Show all	>Lus10030878 pacid=23155331 polypeptide=Lus10030878 locus=Lus10030878.g ID=Lus10030878.BGIv1.0 annot-version=v1.0 MVAPAMYEEEEQTASSIVEDDDILKPDYDSDEITPESLHAKGVRGGFEDFIRVGFAPLPEDTVQHSRIAKQFRDGLGKRAAGDDAVTVTAVHRNLISWPT ARARFISFRIHEKAVADKCGGVSNARFAWYGGSKDEICKILSFGFSRCTGGGGGWNGQQVTHGVGVHLSPIAFPADCLETATVDQHGTKHLLLCRVILGK MEAIPAGSSQSTPSSVQFDSGVDDLANPRRFVVWSSFMNSHIFPVCVVSFRDPGNGIESIREAPPLGDGSRRPRSPWMSFPALLSVLSEVLDRPAKLMIS KSYDDFKRQRITREQLVRKLRQLVGDELLASVIKSKVLFFPSSVIAFKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10030878 [exp]	0	1
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10038108 [exp]	2.6	0.9004
AT4G00910			Aluminium activated malate tra...		Lus10033223 [exp]	3.5	0.8877
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10014505 [exp]	9.8	0.8895
AT5G52830	WRKY	ATWRKY27, WRKY2...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10027538 [exp]	12.3	0.8810
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10038651 [exp]	18.3	0.8824
AT1G64300			Protein kinase family protein ...		Lus10033941 [exp]	18.8	0.8453
AT1G70570			anthranilate phosphoribosyltra...		Lus10006201 [exp]	21.7	0.8823
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Lus10007530 [exp]	22.6	0.8958
AT2G34750			RNA polymerase I specific tran...		Lus10005693 [exp]	25.8	0.8640
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10031361 [exp]	33.0	0.8695

Compare expression of checked genes

Lus10030878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.