Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23540 521 / 5e-179 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G70460 509 / 3e-174 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G10620 462 / 4e-156 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G70450 426 / 3e-146 Protein kinase superfamily protein (.1) AT1G68690 416 / 4e-138 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT5G38560 409 / 7e-136 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G26150 408 / 2e-134 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT3G24550 401 / 6e-133 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT4G34440 383 / 6e-126 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT1G52290 375 / 1e-124 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030610 [exp] 663 / 0 AT1G23540 354 / 9e-112 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10013013 [exp] 660 / 0 AT1G70460 596 / 0.0 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) Lus10029151 [exp] 659 / 0 AT1G23540 575 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10013014 [exp] 656 / 0 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10034082 [exp] 422 / 6e-140 AT5G38560 700 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10003066 [exp] 421 / 1e-139 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10011098 [exp] 405 / 2e-134 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 399 / 1e-131 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 396 / 3e-131 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G189700 [exp] 536 / 0 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 428 / 3e-142 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 420 / 1e-139 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.004G105200 [exp] 410 / 1e-135 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.010G132900 [exp] 406 / 1e-133 AT1G26150 605 / 0.0 proline-rich extensin-like receptor kinase 10 (.1) Potri.018G081300 [exp] 401 / 7e-133 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.005G124400 [exp] 375 / 9e-124 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.007G027000 [exp] 371 / 2e-121 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.001G183000 [exp] 368 / 3e-121 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.009G115200 [exp] 367 / 1e-119 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10030879 pacid=23155408 polypeptide=Lus10030879 locus=Lus10030879.g ID=Lus10030879.BGIv1.0 annot-version=v1.0 ATGCCGCAGCAGCAGCAGCCGGCCGGTGCGGTCAATCCTCCTCCGGCGGCGATCGGGTCTCCTCCTGGTCAGGCGGGAACCGTAAATTCCCCTGTTCCCG GGGGAAATGATCAAACTGGTCGTTCGTGGTCATCGTCTCAAGGTTCGAGTAATTCGGGGTCGAATTCGAATAATTCGAACAAGGGTTCGAGCAATGGGAA TACGGCGGTGATTTTGGGGAGTGCGGTGGTGGTGAGTGTGATACTTATTGCATTGATCGCGATCATTATTGCAACGAGGAAGAAGAAGAAGACTCCTCGT TATGCTACTGCTCCTCCTCCTTACATGACTCCGCCCCATAATTTCTCTGCTATGCAACAGTCAGACCCATATTACTACGGACATGGTCCACATTCAATGG GATACAACTCCGGCGGCCAAAACCACTCCTACGGCTCACAACACCATTCCGGCGCATTCAGAACTAGTGGGAGCAACGGAGGCAACAATTCCAGTCCGGA TTCCGGCCTAATGGGCGGAGGCAAGTCCTTCTTCAGCCACGAAGAAGTGATGGAAATGACGAAAGGATTCGCTCGCGAGAACATAATCGGGGAAGGAGGC TTCGGGTACGTGTTCAAAGGTCGCAGGCCGGACGGGAAGTTGGTTGCCGTCAAGCAACTCAAGGCCGGGAGTGGACAAGGTGACCGCGAATTCAAGGCCG AGGTCGAGATCATTAGCCGGGTCCACCATCGACACCTTGTGTCCTTGGTTGGTTACAGCATGTCTGATCAGCAGAGGTTGTTGATCTATGAGTTTCTTCC TAACAACACTCTTGAGTATCACTTGCATGCGAAAGGGCGAGGGTTGGATTGGTCTCACAGACTGCGAATCGCCATCGGGGCGGCCAAGGGATTGGCATAC TTGCATGAAGATTGTAGGACTGATGATTTGCCTTGTATCATCAAACTGCAGGTTGCAGACTTTGGTCTTGCGAGATTGAACGATACAACGCAGACCCATG TGTCAACTCGTGTGATGGGAACATTTGGGTACCTGGCTCCAGAGTACGCACAGAGTGGGAAGCTAACTGATAGATCCGATGTCTATTCATTTGGGGTTGT TCTTCTAGAGCTTATAACGGGGAGTAAGCCTGTCGATTCGACTCGTCCCCTCGGAGATGAAAGCTTGGTTGAATGGGCTCGTCCACATCTCATGCACGCC ATGGAGAGCGGAGACCTCGGGGAGCTAGTTGACCCGCGGCTCGAGAAGCGCTACGTCGAGGCAGAACTCGTAAGGATGATCGAGACCGCTGCTGCTTGTA TCCGCCACAATGCTCCCAAGCGGCCCAGAATGGTTCAGGTGGTTAGAGCCCTGGACAGCGACGAATCGGGGGATCTAACGAACGGAATGAAGTACGGGCA GAGCACAATGTACAACTCGGGGCAGTACAACGAAGAGATCATGAAGTTCCGGAGGATGGCGCTAGGTTTGGACGACAGTGGAGAGTTTGGTTACACTAGT GGAGGAGGATACAACTCGAGAGAGATGTCTCACGGTCCGCCGACTTCGACAGCGGACTACACTAGCAGTGGAGAATTAGAGACTAGAGCAATTAACAGAC CCCCAAGAAACTGA
AA sequence Show only first row Show all	>Lus10030879 pacid=23155408 polypeptide=Lus10030879 locus=Lus10030879.g ID=Lus10030879.BGIv1.0 annot-version=v1.0 MPQQQQPAGAVNPPPAAIGSPPGQAGTVNSPVPGGNDQTGRSWSSSQGSSNSGSNSNNSNKGSSNGNTAVILGSAVVVSVILIALIAIIIATRKKKKTPR YATAPPPYMTPPHNFSAMQQSDPYYYGHGPHSMGYNSGGQNHSYGSQHHSGAFRTSGSNGGNNSSPDSGLMGGGKSFFSHEEVMEMTKGFARENIIGEGG FGYVFKGRRPDGKLVAVKQLKAGSGQGDREFKAEVEIISRVHHRHLVSLVGYSMSDQQRLLIYEFLPNNTLEYHLHAKGRGLDWSHRLRIAIGAAKGLAY LHEDCRTDDLPCIIKLQVADFGLARLNDTTQTHVSTRVMGTFGYLAPEYAQSGKLTDRSDVYSFGVVLLELITGSKPVDSTRPLGDESLVEWARPHLMHA MESGDLGELVDPRLEKRYVEAELVRMIETAAACIRHNAPKRPRMVQVVRALDSDESGDLTNGMKYGQSTMYNSGQYNEEIMKFRRMALGLDDSGEFGYTS GGGYNSREMSHGPPTSTADYTSSGELETRAINRPPRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70460		AtPERK13, RHS10	proline-rich extensin-like rec...		Lus10030879 [exp]	0	1
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10043026 [exp]	4.2	0.9758
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	4.7	0.9769
AT5G41810			unknown protein		Lus10003901 [exp]	5.5	0.9760
AT1G14160			Uncharacterised protein family...		Lus10037160 [exp]	5.7	0.9742
AT1G47710			Serine protease inhibitor (SER...		Lus10005089 [exp]	7.1	0.9742
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10018383 [exp]	7.2	0.9683
AT2G24370			Protein kinase protein with ad...		Lus10021596 [exp]	7.7	0.9635
					Lus10017917 [exp]	8.5	0.9727
AT5G18840			Major facilitator superfamily ...		Lus10033995 [exp]	9.3	0.9590
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10019087 [exp]	10.4	0.9710

Compare expression of checked genes

Lus10030879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.