Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10610 201 / 5e-60 bHLH bHLH090 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G16910 133 / 5e-34 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G57150 102 / 6e-25 bHLH bHLH035 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G21330 84 / 1e-18 bHLH bHLH022, DYT1 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G29930 80 / 4e-17 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G17880 78 / 2e-15 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT2G28160 77 / 2e-15 bHLH ATFIT1, ATBHLH29, bHLH029, FIT1, ATBHLH029, FRU ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) AT1G32640 75 / 2e-14 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G12860 74 / 4e-14 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G26744 74 / 6e-14 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030609 [exp] 664 / 0 AT2G16910 239 / 1e-74 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10036068 [exp] 125 / 6e-34 AT5G57150 79 / 3e-18 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10006951 [exp] 84 / 2e-18 AT5G57150 243 / 2e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10000037 [exp] 82 / 1e-17 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10018395 [exp] 79 / 2e-16 AT4G21330 131 / 1e-37 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030970 [exp] 81 / 3e-16 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10026278 [exp] 81 / 3e-16 AT2G16910 233 / 2e-69 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007618 [exp] 76 / 7e-16 AT4G21330 141 / 2e-42 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10016151 [exp] 75 / 1e-14 AT2G28160 235 / 1e-75 ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G189600 [exp] 154 / 6e-42 AT1G10610 223 / 3e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G041500 [exp] 117 / 6e-31 AT2G16910 109 / 7e-28 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G136300 [exp] 122 / 4e-30 AT2G16910 461 / 1e-156 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.018G141800 [exp] 99 / 2e-23 AT5G57150 256 / 6e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.006G074900 [exp] 91 / 1e-20 AT5G57150 200 / 3e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.004G029800 [exp] 86 / 3e-19 AT4G21330 153 / 8e-47 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.018G141600 [exp] 80 / 7e-17 AT5G57150 191 / 2e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.003G092200 [exp] 80 / 8e-16 AT1G32640 559 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.001G142200 [exp] 79 / 1e-15 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.014G099700 [exp] 76 / 1e-14 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10030880 pacid=23155364 polypeptide=Lus10030880 locus=Lus10030880.g ID=Lus10030880.BGIv1.0 annot-version=v1.0 ATGGCGGGAGGATTGGATAGCGTCGTCGCATTACTCCGTCCGATCGTCGATTGCAGAGCTTGGGATTACTGCGTCGTCTGGAAGCTAACTCCCGTCTCTT CCAGGTTCCTGGAGTGGATTGGTTGCTGCTGCAGCGGCGCAATGGACAGTGGCGGATTTCTAGCTGATAAGGTTGTTAAGCAAGAAGCTGGAGCTGGAGC AAACGGTCCGTTTTGCAGAGATTTAAATTTCATGCATCCGATTGGCTCAATGGCTTGTCTCGCTCTTGCTCGCTTCCCTTCTTCTCTGCCTTTGTATCCC GGAATTCACGGAGCTGTTGCAATTTCAAACGAATCAACTTGGATTCACTCTGATGCCCAAACCTATGCTGGATCAGGTGAAACGCGAGTTCTTATCCCGG TAATCGGTGGCCTTATTGAGCTTTTTGCAGCCAAACATGTTGATCAAGATGATATGATTGTTGACTTGATTTTGACTCACTGCAACACCCTCCTATATGG AATGATCATGAAGGAACAGAGTTTGGATCCCTCGAATTCAAACGAGTTTGAAGACTTGTGCTCGCCTTCATACAAATCGAGCATTTCTATCCCTTCCAAT GTGTATCCATTGTTGGATAGGACTTATTCTGCATTATCTGCAAGTGCAGCAGCTAGCTCAAGCAAGCCACCCAAGTTGACTGACAACTTTATGAACAGAA AGGTCGCAAAATCTAACGAGAAACCGGCCAGGAAGCGTCCCTCGTCTAAGAATCTTATCCTGGAGAGGAACAGGAGGAACAAGATTCAACAGCGGCTCTT CGCCCTACGTGCCTTGGTCCCCAATATTTCCAAGATGGACAAAGCATCAATCATCGGAGATGCAGTCGACTACATCATCGAGTTACAGAACGAGAGGAAG AGACTCGAAAAGGAGCTTGACCAGCTTGAAGAACAGGAGGAGAGTCGAAAATTCGACTCCGAACGAACGAAAAAAGTCAGCAGCAACCTTCCTACTGCTG TCGTTAAAACTGAGATGATCGAGGCCGATCTGGACGTGATCAACATTGGTCGGAGAGAGTACCTGATCAGGCTCTTGTACAACCAGAGGAAAGGAGGGCT AGTGATGCTGATGGAGACTCTGAGTTCTTTAGGCCTTCAAGTTGTTGATGCCAACATTACAAAGATCCATGGCAGTGTCTTACACATTCTCCGGGTTCAG GGAAACGAGGTAATAACACAGTGGAAACTGAGGGAAAGGTTGGTAAAGCTAATATGA
AA sequence Show only first row Show all	>Lus10030880 pacid=23155364 polypeptide=Lus10030880 locus=Lus10030880.g ID=Lus10030880.BGIv1.0 annot-version=v1.0 MAGGLDSVVALLRPIVDCRAWDYCVVWKLTPVSSRFLEWIGCCCSGAMDSGGFLADKVVKQEAGAGANGPFCRDLNFMHPIGSMACLALARFPSSLPLYP GIHGAVAISNESTWIHSDAQTYAGSGETRVLIPVIGGLIELFAAKHVDQDDMIVDLILTHCNTLLYGMIMKEQSLDPSNSNEFEDLCSPSYKSSISIPSN VYPLLDRTYSALSASAAASSSKPPKLTDNFMNRKVAKSNEKPARKRPSSKNLILERNRRNKIQQRLFALRALVPNISKMDKASIIGDAVDYIIELQNERK RLEKELDQLEEQEESRKFDSERTKKVSSNLPTAVVKTEMIEADLDVINIGRREYLIRLLYNQRKGGLVMLMETLSSLGLQVVDANITKIHGSVLHILRVQ GNEVITQWKLRERLVKLI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16910	bHLH	AMS, bHLH021	ABORTED MICROSPORES, basic hel...		Lus10030880 [exp]	0	1
AT2G17080			Arabidopsis protein of unknown...		Lus10025125 [exp]	14.8	0.7992
AT5G46060			Protein of unknown function, D...		Lus10000133 [exp]	41.7	0.7639
					Lus10011277 [exp]	59.7	0.7694
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10025520 [exp]	69.1	0.7330
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10003511 [exp]	87.3	0.7558
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Lus10024636 [exp]	90.5	0.7399
AT3G47630			unknown protein		Lus10023590 [exp]	121.4	0.7400
AT2G17080			Arabidopsis protein of unknown...		Lus10014449 [exp]	132.7	0.7385
AT2G17080			Arabidopsis protein of unknown...		Lus10023960 [exp]	153.4	0.7237
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Lus10010432 [exp]	200.4	0.7143

Compare expression of checked genes

Lus10030880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.