Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21950 214 / 2e-68 SKIP6 SKP1 interacting partner 6 (.1) AT4G39550 117 / 4e-31 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G19250 114 / 4e-31 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G27910 110 / 3e-29 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G39590 107 / 3e-27 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G23580 103 / 4e-26 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G29370 102 / 2e-25 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G19870 102 / 3e-25 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT4G39580 100 / 8e-25 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G39240 99 / 2e-24 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030606 [exp] 136 / 3e-41 AT2G21950 82 / 1e-19 SKP1 interacting partner 6 (.1) Lus10042824 [exp] 42 / 0.0002 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 41 / 0.0006 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G081100 [exp] 235 / 8e-77 AT2G21950 390 / 3e-135 SKP1 interacting partner 6 (.1) Potri.014G083200 [exp] 55 / 6e-09 AT3G61350 299 / 7e-100 SKP1 interacting partner 4 (.1) Potri.010G059200 [exp] 41 / 0.0005 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G004500 [exp] 40 / 0.0005 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10030883 pacid=23155350 polypeptide=Lus10030883 locus=Lus10030883.g ID=Lus10030883.BGIv1.0 annot-version=v1.0 ATGCAGCTCCCTCGAGAATCCCCCGCAGCAGGCGTGATAGACGGCAAGATCTACGTCATCGGCGGCTCCGCCGTCGACACCCGATCACAGTCCAAGCACT GGGCTGAAGTGTTCGATCCAGCGACTCAGAAATGGGACACCCTCAAGAGCCCGATCGAGGACGAGTTCCCACTGCGGCCGAAATGGATGCACGCCAGCGC AGTAATCGGCGCCGGCGGGACGGCTAGAATCTACGCGATGGCGGATCGGCACGGATTCGTTTACGAGCCGGGGAATGGGAAATGGAGGATGGCGGAGAAG TGGTTGAATCTAGGGTGGAGGGAGAGGGCGTGTGTGGTGCATGATGTTTTGTACTGCTATGATTACTGGGGGAAGATGCAGGGGTTTGATTTCGAAGCTG GTGGTGGGAGGGGAATGTGGAAGAAGGTGAGAGGGTTGAGGAGGCTGACGAGGTATTTGGTCGGAGCGACGATGGCGAATGTGGGAGGGAAGTTGATGTT GGTTTGGGAAGGGATGGTGATAGGGAATGGGATGGAGATTTGGTGCGCTGAGATTGAGGTGGAGAAGAGAGGAGGAGAGTTATGGGGGAATGCTATCTGG TTTGATGTTGTTTGTAAGGTTCCTCCTGGGTCTTCCGTTGTTCATTGCTTGGATATGACTCTGTGA
AA sequence Show only first row Show all	>Lus10030883 pacid=23155350 polypeptide=Lus10030883 locus=Lus10030883.g ID=Lus10030883.BGIv1.0 annot-version=v1.0 MQLPRESPAAGVIDGKIYVIGGSAVDTRSQSKHWAEVFDPATQKWDTLKSPIEDEFPLRPKWMHASAVIGAGGTARIYAMADRHGFVYEPGNGKWRMAEK WLNLGWRERACVVHDVLYCYDYWGKMQGFDFEAGGGRGMWKKVRGLRRLTRYLVGATMANVGGKLMLVWEGMVIGNGMEIWCAEIEVEKRGGELWGNAIW FDVVCKVPPGSSVVHCLDMTL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21950		SKIP6	SKP1 interacting partner 6 (.1...		Lus10030883 [exp]	0	1
AT3G57500			unknown protein		Lus10012197 [exp]	4.9	0.7003
AT3G26010			Galactose oxidase/kelch repeat...		Lus10003692 [exp]	5.2	0.7061
AT5G16920			Fasciclin-like arabinogalactan...		Lus10039146 [exp]	6.6	0.7322
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10033500 [exp]	6.8	0.7660
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10006702 [exp]	8.4	0.6561
AT5G62280			Protein of unknown function (D...		Lus10031122 [exp]	10.0	0.7597
AT5G26330			Cupredoxin superfamily protein...		Lus10002451 [exp]	12.2	0.7166
AT2G17080			Arabidopsis protein of unknown...		Lus10023962 [exp]	13.6	0.7360
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Lus10001706 [exp]	15.9	0.6557
					Lus10003927 [exp]	16.1	0.6842

Compare expression of checked genes

Lus10030883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.