Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14670 372 / 1e-133 ATARFA1B ADP-ribosylation factor A1B (.1) AT1G10630 369 / 1e-132 ATARFA1F ADP-ribosylation factor A1F (.1) AT3G62290 369 / 1e-132 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT1G70490 369 / 2e-132 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G23490 369 / 2e-132 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT2G47170 369 / 2e-132 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT2G15310 267 / 7e-92 ATARFB1A ADP-ribosylation factor B1A (.1) AT2G24765 247 / 3e-84 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT3G03120 242 / 4e-82 ATARFB1C ADP-ribosylation factor B1C (.1) AT5G17060 239 / 7e-81 ATARFB1B ADP-ribosylation factor B1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013021 [exp] 385 / 2e-137 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 374 / 9e-134 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10031436 [exp] 372 / 1e-133 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10030605 [exp] 399 / 9e-133 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10029144 [exp] 375 / 1e-130 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1) Lus10013020 [exp] 314 / 6e-108 AT2G47180 336 / 3e-114 galactinol synthase 1 (.1) Lus10002817 [exp] 266 / 1e-91 AT2G15310 273 / 1e-94 ADP-ribosylation factor B1A (.1) Lus10009571 [exp] 244 / 7e-83 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1) Lus10020392 [exp] 242 / 3e-82 AT5G17060 363 / 3e-130 ADP-ribosylation factor B1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G005500 [exp] 373 / 3e-134 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1) Potri.005G007400 [exp] 373 / 3e-134 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 373 / 3e-134 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.014G116500 [exp] 373 / 3e-134 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.013G005600 [exp] 372 / 2e-133 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.005G007300 [exp] 372 / 2e-133 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.008G100000 [exp] 363 / 3e-130 AT1G10630 366 / 1e-131 ADP-ribosylation factor A1F (.1) Potri.010G152600 [exp] 362 / 8e-130 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1) Potri.005G142100 [exp] 335 / 4e-119 AT1G10630 339 / 5e-121 ADP-ribosylation factor A1F (.1) Potri.001G301200 [exp] 285 / 2e-99 AT3G62290 284 / 4e-99 ADP-ribosylation factor A1E (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00025 [flax] [poplar] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Lus10030884 pacid=23155179 polypeptide=Lus10030884 locus=Lus10030884.g ID=Lus10030884.BGIv1.0 annot-version=v1.0 ATGGGGTTGACGTTCACTAAGCTGTTCAGCCGGCTGTTTGCCAAGAAGGAGATGAGGATTCTCATGGTTGGTCTCGATGCGGCTGGTAAGACCACCATCT TGTATAAGCTCAAGCTCGGAGAGATCGTCACCACCATTCCCACCATCGGATTCAACGTGGAGACTGTTGAATACAAGAACATTAGCTTCACAGTGTGGGA TGTCGGGGGTCAGGACAAGATCCGTCCATTGTGGAGGCATTATTTCCAGAACACTCAGGGTCTCATCTTTGTTGTGGACAGCAATGACAGAGATCGTGTT GTTGAGGCCAGAGATGAGTTGCACAGGATGTTGAATGAGGATGAGCTGAGAGATGCAGTGCTGCTTGTTTTCGCTAACAAACAGGATCTGCCAAATGCAA TGAACGCTGCTGAGATCACCGACAAGCTTGGCCTCCACTCCCTCCGTCAGCGTCACTGGTACATTCAGAGCACCTGTGCTACTTCTGGTGAGGGTCTTTA CGAAGGTCTGGACTGGCTCTCCAACAACATCGCTAACAAGGTAACTAGAGATAATGGTTACGCGCAAATATGCTCGTCTCGTCTTGAATGTGTTGCATGA
AA sequence Show only first row Show all	>Lus10030884 pacid=23155179 polypeptide=Lus10030884 locus=Lus10030884.g ID=Lus10030884.BGIv1.0 annot-version=v1.0 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKVTRDNGYAQICSSRLECVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10030884 [exp]	0	1
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10032579 [exp]	1.4	0.9146
AT4G33640			unknown protein		Lus10007087 [exp]	1.7	0.9181
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10024657 [exp]	3.2	0.8982
AT4G17100			unknown protein		Lus10040133 [exp]	6.0	0.8754
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10040745 [exp]	7.7	0.8664
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10017304 [exp]	8.9	0.9014
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10037430 [exp]	9.2	0.8791
AT1G69430			unknown protein		Lus10036796 [exp]	9.9	0.8881
AT1G79550		PGK	phosphoglycerate kinase (.1.2)		Lus10031743 [exp]	10.7	0.8972
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032190 [exp]	11.1	0.9028

Compare expression of checked genes

Lus10030884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.