Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60490 1314 / 0 PI3K, ATVPS34 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) AT1G49340 112 / 6e-25 ATPI4K ALPHA, ATPI4KALPHA Phosphatidylinositol 3- and 4-kinase family protein (.1.2) AT5G64070 90 / 5e-18 PI-4KBETA1, PI4KBETA1 phosphatidylinositol 4-OH kinase beta1 (.1) AT5G09350 89 / 8e-18 PI-4KBETA2, PI4KBETA2 phosphatidylinositol 4-OH kinase beta2 (.1) AT1G51040 67 / 3e-11 Protein kinase superfamily protein (.1) AT1G50030 56 / 1e-07 TOR target of rapamycin (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030605 [exp] 1517 / 0 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10040481 [exp] 94 / 2e-19 AT1G49340 1556 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Lus10000833 [exp] 86 / 9e-17 AT5G64070 776 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Lus10011285 [exp] 86 / 1e-16 AT1G49340 3010 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Lus10037246 [exp] 59 / 3e-08 AT1G50030 4101 / 0.0 target of rapamycin (.1.2) Lus10035661 [exp] 58 / 5e-08 AT1G50030 2590 / 0.0 target of rapamycin (.1.2) Lus10002098 [exp] 52 / 3e-06 AT5G49970 731 / 0.0 HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2) Lus10011315 [exp] 48 / 1e-05 AT1G49340 307 / 9e-96 Phosphatidylinositol 3- and 4-kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G075100 [exp] 1365 / 0 AT1G60490 1388 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Potri.009G113700 [exp] 100 / 4e-21 AT1G49340 3062 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Potri.004G152400 [exp] 98 / 1e-20 AT1G49340 2964 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Potri.007G109000 [exp] 88 / 2e-17 AT5G64070 1412 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Potri.005G059000 [exp] 85 / 1e-16 AT5G64070 1497 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Potri.009G084500 [exp] 64 / 5e-10 AT1G50030 4038 / 0.0 target of rapamycin (.1.2) Potri.001G289200 [exp] 56 / 1e-07 AT1G50030 4080 / 0.0 target of rapamycin (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00792 [flax] [poplar] PI3K_C2 Phosphoinositide 3-kinase C2 CL0016 [flax] [poplar] PKinase PF00454 [flax] [poplar] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase CL0020 [flax] [poplar] TPR PF00613 [flax] [poplar] PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain)
Representative CDS sequence Show only first row Show all	>Lus10030885 pacid=23155306 polypeptide=Lus10030885 locus=Lus10030885.g ID=Lus10030885.BGIv1.0 annot-version=v1.0 ATGAGCCGGAACGAGTTCCGATTCTTCCTATCGTACGACATCAATCTCCCGGTGACATTCCGAATCGAGAGATTGGAAGGATCCTTGCCTCCTGTCAAAT TGCCGGACTCAGGGCTTGATTCCACTACGGAAGAGAGAAGAGCAGAGCTGTATGTTGAGTGTGTACTGTGTATGGATGGAGCTCCCTTTGGTCTTCCAAT GCGAACAAGGCTGGAGACTAATGGAACCTCAGCATGCTGGAATGAACTCATCACATTGAGTACTAAATATAGGGACCTGAGTAGATACTCACAGCTCGCG TTGACAGTTTGGGATGTTTCACGTGGAAAAGACGAAGGGCTCATTGGTGGGGCTACTATTCCTCTTTTCAACAGTAAGTTGCAACTTAAAACGGGTAAGC TGAAGCTTAGGCTTTGGTCGGGAAAAGAAGCTGATGGATCATTTCCTACTACTACACCTGGAAAGGTCCCAAGGCACGAGCGTGGAGAATTGGAGAGTCT GGAGAAGCTTCTGAATAAATACGAAAGAGGACAGATTCAACGTGTAGATTGGCTCGATCGGCTTACGTTTAAATCAATGGAGAAAATTAAGGAACGTGAG AGCTCTAAAACCGGAAGTTCGCATCTTTACTTGGTTGTTGATTTCTGCAGCTTTGAACATAGAGTTGTTTTCCAGGAATCAGGGGCAAATTTTGTATTCC CATCACCCATTTCTTCAACGAATGAACTTGTTACTGTGTGGGACCCTGAAATGGGTAAGATAAATCCTTCTGAGCACAAGCAACTGAAATTAGCAAGGAG CTTAACACGAGGTATCATTGACAAGGATTTGAAGCCAAGCTCCAACGAAAGAAAGTCGATACAAAGAATTTTAAAATACCCACCAACACGATCATTGAGT GGTGATGAGAGACAACTCTTATGGAAATTCCGGTTTTCTTTGATGTCTGAAAAGAGGGCACTGACAAAGTTTCTCCGATGCGTGGAGTGGAGTGACCTTC AGGAAGCAAAACAAGCGCTAGAGTTGATGGGCAAATGGGAAACTATTGATGTCTCTGATGCGCTTGAGCTTCTATCTCCTCTTTTTGAAAGTGAAGAGGT TCGTGCTTATGCTGTCACTGTTTTGGAGAGGGCTGATGATGAAGAACTCCAATGTTACTTGCTTCAACTAGTTCAGGCGCTAAGATTTGAACGATCCGAT AAATCTCGTCTTTCTCAGTTCCTTGTGCAACGCTCTGAAACCTTATTCATCTTGACAGCATTAAACAACATTGAGTTGGCTAGCTTTCTCCGATGGTACG TTGCTGTGGAATTTTATGATCACGCTTATACCAAACGCTTTTATTGTACTCATGAGCTCCTAGAAGAGAATATGATGAAGTTGCTAGCTGGTCCAGACGG AGAAGAGGATGGATTCAAGTCGTGGCAAAGTTTAGTGCGCCAGACAGAATTGACAGCGCAGTTGTGTTCTATAACAAGAGATGTCAGAAATGTTCGAGGC AACACTCAGAAGAAAATTGAAAAGCTTAGACAGCTTCTTTCTGGGCTTCTCAGTGAACTCACTTATTTTGAGGAGCCGATAAGATCTCCACTGGCTCCAT CTGTCCTCATTTCTGGGATTGTGCCATCGGAGTCATCAATATTCAAAAGTGCGCTGCACCCCCTGCGCCTGACTTTCAGAACACAGAGTGGTGGAACTTC TATGATCATTTTTAAGAAGGGTGATGATATTCGGCAAGACCAACTGGTTGTTCAGATGGTTTCTCTAATGGATCGGTTGCTTAAGTTGGAAAATCTTGAT CTGCATTTGACTCCATATAAAGTTCTTGCTACTGGACAAGATGAGGGCATGCTCGAATTCATACCCTCACGAACTTTGGCTCAGCTTCAGTCAATAGCCT TTATTCCTCAACGTTCATCCATTTCGTTTGTCTTGGTTGTCGAAATCCAGATTCTCTCGGAGCATCGTAGCATTACAAGCTATTTACAGAAGTTTCATCC TGATGATCACGGGCCCTTTGGGATCACTCCCACTTGTCTCGAGACGTTTATTAAAAGCTGTGCAGGCTATTCTGTCATCACATATATACTGGGCATCGGA GATAGACACTTGGACAATCTTCTACTCAGAGACGACGGGCGCATGTTCCACGTCGACTTTGGTTATATTCTCGGCCGAGATCCTAAACCATTTCCGCCAC CGATGAAGCTTTGCAAAGAGATGGTCGAGGCGATGGGTGGCGCAGAAAGCCAATACTACACCAGGTTCAAATCATATTGCTGCGAAGCATACAACATCCT CCGGAAATCAAGCAACCTAATCCTTAACCTTTTCCATCTGATGGCCGGTTCCAATATCCCCGATATCGCTTCCGATCCAGAGAAGGGAATACTCAAGCTC CAGGAGAAGTTCCGGCTGGACTTGGACGACGAAGCAGCCATCCATTTCTTCCAGGACCTGATCAACGAGAGCGTCAGCGCATTGTTCCCTCAAATGGTGG AGACTATTCACCGTTGGGCTCAGTACTGGCGCTAA
AA sequence Show only first row Show all	>Lus10030885 pacid=23155306 polypeptide=Lus10030885 locus=Lus10030885.g ID=Lus10030885.BGIv1.0 annot-version=v1.0 MSRNEFRFFLSYDINLPVTFRIERLEGSLPPVKLPDSGLDSTTEERRAELYVECVLCMDGAPFGLPMRTRLETNGTSACWNELITLSTKYRDLSRYSQLA LTVWDVSRGKDEGLIGGATIPLFNSKLQLKTGKLKLRLWSGKEADGSFPTTTPGKVPRHERGELESLEKLLNKYERGQIQRVDWLDRLTFKSMEKIKERE SSKTGSSHLYLVVDFCSFEHRVVFQESGANFVFPSPISSTNELVTVWDPEMGKINPSEHKQLKLARSLTRGIIDKDLKPSSNERKSIQRILKYPPTRSLS GDERQLLWKFRFSLMSEKRALTKFLRCVEWSDLQEAKQALELMGKWETIDVSDALELLSPLFESEEVRAYAVTVLERADDEELQCYLLQLVQALRFERSD KSRLSQFLVQRSETLFILTALNNIELASFLRWYVAVEFYDHAYTKRFYCTHELLEENMMKLLAGPDGEEDGFKSWQSLVRQTELTAQLCSITRDVRNVRG NTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPSVLISGIVPSESSIFKSALHPLRLTFRTQSGGTSMIIFKKGDDIRQDQLVVQMVSLMDRLLKLENLD LHLTPYKVLATGQDEGMLEFIPSRTLAQLQSIAFIPQRSSISFVLVVEIQILSEHRSITSYLQKFHPDDHGPFGITPTCLETFIKSCAGYSVITYILGIG DRHLDNLLLRDDGRMFHVDFGYILGRDPKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILKL QEKFRLDLDDEAAIHFFQDLINESVSALFPQMVETIHRWAQYWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030885 [exp]	0	1
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Lus10034481 [exp]	1.4	0.9362
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10036995 [exp]	1.7	0.9376
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10042101 [exp]	2.2	0.9303
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Lus10003405 [exp]	3.0	0.9358
AT1G28260			Telomerase activating protein ...		Lus10014007 [exp]	4.5	0.9339
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Lus10021544 [exp]	4.6	0.9131
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Lus10027482 [exp]	4.9	0.9276
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Lus10032883 [exp]	5.3	0.9283
AT3G54440			glycoside hydrolase family 2 p...		Lus10039519 [exp]	8.0	0.9005
AT3G54440			glycoside hydrolase family 2 p...		Lus10024155 [exp]	8.4	0.9262

Compare expression of checked genes

Lus10030885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.