Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10640 634 / 0 Pectin lyase-like superfamily protein (.1) AT1G60590 633 / 0 Pectin lyase-like superfamily protein (.1) AT5G14650 522 / 0 Pectin lyase-like superfamily protein (.1) AT3G26610 406 / 2e-137 Pectin lyase-like superfamily protein (.1) AT1G48100 376 / 1e-125 Pectin lyase-like superfamily protein (.1) AT1G02460 354 / 5e-117 Pectin lyase-like superfamily protein (.1) AT1G56710 343 / 1e-113 Pectin lyase-like superfamily protein (.1) AT4G01890 335 / 6e-110 Pectin lyase-like superfamily protein (.1) AT1G23460 314 / 6e-102 Pectin lyase-like superfamily protein (.1) AT1G70500 301 / 7e-97 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030604 [exp] 967 / 0 AT1G60590 665 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029140 [exp] 809 / 0 AT1G60590 660 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10013025 [exp] 729 / 0 AT1G10640 634 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029121 [exp] 412 / 1e-139 AT3G26610 566 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10009994 [exp] 352 / 5e-116 AT1G02460 606 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10037834 [exp] 351 / 1e-115 AT1G48100 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10017109 [exp] 349 / 4e-115 AT1G48100 647 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038059 [exp] 349 / 8e-115 AT1G02460 542 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030602 [exp] 301 / 3e-96 AT1G23460 624 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G042100 [exp] 753 / 0 AT1G60590 675 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G189200 [exp] 718 / 0 AT1G60590 644 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G346800 [exp] 544 / 0 AT5G14650 506 / 5e-178 Pectin lyase-like superfamily protein (.1) Potri.008G188300 [exp] 400 / 3e-135 AT3G26610 545 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G044001 [exp] 399 / 1e-134 AT3G26610 579 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G152000 [exp] 377 / 3e-126 AT1G48100 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G190600 [exp] 372 / 3e-124 AT1G02460 582 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G100500 [exp] 372 / 6e-124 AT1G48100 653 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G005500 [exp] 370 / 2e-123 AT1G02460 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G115700 [exp] 367 / 2e-121 AT1G02460 593 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10030886 pacid=23155233 polypeptide=Lus10030886 locus=Lus10030886.g ID=Lus10030886.BGIv1.0 annot-version=v1.0 ATGGAAGGGGTGAACCGGAGAAGCTTCACATTCATGGTGTTGGTTGCGTTTCTAGTTTGGTCAGCAAGTTTTGATACTTGCATTGCAAGGAGAGGCAAGC ATTGGAGGCAGAACAGAGGGTTTTCAGCTTCTCTGACAAAGAAGAAGGTCAAAAGCCATGGAAGCAGCCACCATAGTAACAACCATTACAATGGCGGCAG ATCGTCAAAGTCGCCAAAGAAAGCTCCTTCACCTATAGCTCCTAATTCCCCGTCTCCGATGAAACCACCAAAGCATGTTCCAGTAGCATCACCGGAACCT CCTTCGCCTACTAGGCCGCACGCAGATTCGTTGACATTCAATGTCGTCAACTTTGGTGCCAAGGGAGATGGAAAGAGCGATGACACAAAGGCATTCCAGG GTGCATGGGCAGCTGCTTGCAAAGTTGCAAATTCAATTATGCTTGTTCCAGAGCAACATCGATTCCTTGTTGGACCTATTTCTTTCTCTGGTCCATACTG TCAGCAAGGCATCACCTTCCAGCTGGATGGCACAATTGTTGCACCAACGAACTCCTACGTTTGGGGCAAAGGATTGCTGCAGTGGCTGGAATTCAGCAAG CTAGCACAGATCACAATCCAAGGGAAAGGTACCATTGATGGGAGTGGTTCAGTGTGGTGGCAAGACAATCCAATCGATGTACTCGAAGACGGATTAACGC AGCAGATTATCCTGTTAAACAGCACTCTAGAGAAGCAACCACCACGAACGGTAAGAAGTGAACTCAGTAGCAAAATGCCAAGCATCAAGCCAACGGCACT GAGGTTTTATGGAAGTGTGAATGTGACGGTGACAGGCATAACGATTCAGAACAGTCCACAATGCCACCTCAAGTTTGACAACTGCATTGGAGTGATGGTA CATCATATTAGAGTCTCGTCTCCTGGAGATAGTCCTAATACAGATGGAGTCCACTTGCAGAATTCCAGAGATGTGCTGATCCATAGCAGCCTCCTTGCAT GCGGAGACGACTGCATTTCCATACAAACAGGATGCTCAAATGTATACATACATGACGTAAACTGCGGTCCAGGCCACGGAATCAGCATCGGAAGTTTGGG AAGGGACAATGCGCGAGCCTGCGTCTCTAACGTCACTGTCAAAAACGTCAACATGCACAACACAATGACCGGTGTTAGGATCAAGACATGGCAGGGCGGA TCAGGCTCGGTGTACGGGATCATGTTCTCAAACATTCAAGTTTCCGAAGTCCAATTCCCAATCGTAATCGACCAATACTATTGTGACAAGGCTACATGTA AGAACCAATCATCAGCGGTGTCGGTATCGGGGATCAACTACGAACAAATCAAAGGAACCTACACGGTGAAGCCCGTGCATTTCGCCTGCAGCGACAACTT ACCATGTGCGGACATAAGCTTAACCAGCATTGAGTTGAAACCGCTGCAAGAGAAGTTCCACATGTACGATCCGTTCTGCTGGAATACATTCGGAGAGTTG AACACTCCGGCTGTTCCTCCGATTCAATGCCTCCAACTTGGTAAGCCGACAAGCAACCGGCCCCAAACCGATCGCGATTCGTGTTGA
AA sequence Show only first row Show all	>Lus10030886 pacid=23155233 polypeptide=Lus10030886 locus=Lus10030886.g ID=Lus10030886.BGIv1.0 annot-version=v1.0 MEGVNRRSFTFMVLVAFLVWSASFDTCIARRGKHWRQNRGFSASLTKKKVKSHGSSHHSNNHYNGGRSSKSPKKAPSPIAPNSPSPMKPPKHVPVASPEP PSPTRPHADSLTFNVVNFGAKGDGKSDDTKAFQGAWAAACKVANSIMLVPEQHRFLVGPISFSGPYCQQGITFQLDGTIVAPTNSYVWGKGLLQWLEFSK LAQITIQGKGTIDGSGSVWWQDNPIDVLEDGLTQQIILLNSTLEKQPPRTVRSELSSKMPSIKPTALRFYGSVNVTVTGITIQNSPQCHLKFDNCIGVMV HHIRVSSPGDSPNTDGVHLQNSRDVLIHSSLLACGDDCISIQTGCSNVYIHDVNCGPGHGISIGSLGRDNARACVSNVTVKNVNMHNTMTGVRIKTWQGG SGSVYGIMFSNIQVSEVQFPIVIDQYYCDKATCKNQSSAVSVSGINYEQIKGTYTVKPVHFACSDNLPCADISLTSIELKPLQEKFHMYDPFCWNTFGEL NTPAVPPIQCLQLGKPTSNRPQTDRDSC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10640			Pectin lyase-like superfamily ...		Lus10030886 [exp]	0	1
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10019105 [exp]	1.4	0.9684
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10019106 [exp]	4.2	0.9669
					Lus10002045 [exp]	9.5	0.9641
AT1G03890			RmlC-like cupins superfamily p...		Lus10003554 [exp]	10.5	0.8989
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10002046 [exp]	12.2	0.9630
AT5G01660			unknown protein		Lus10018307 [exp]	14.0	0.9622
AT1G60590			Pectin lyase-like superfamily ...		Lus10030604 [exp]	16.9	0.8528
					Lus10041871 [exp]	17.1	0.9601
					Lus10007549 [exp]	20.3	0.9588
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10011333 [exp]	20.4	0.9576

Compare expression of checked genes

Lus10030886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.