Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52640 658 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77360 265 / 2e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49730 228 / 4e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 218 / 2e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G15010 218 / 4e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62470 218 / 6e-64 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 216 / 7e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 215 / 1e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20300 211 / 6e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65820 208 / 7e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030603 [exp] 1016 / 0 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 263 / 4e-80 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001633 [exp] 223 / 3e-66 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011566 [exp] 221 / 1e-64 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034419 [exp] 213 / 4e-62 AT1G73400 684 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 213 / 1e-61 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021991 [exp] 211 / 5e-61 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019141 [exp] 209 / 2e-60 AT1G73400 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 207 / 1e-59 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G102700 [exp] 764 / 0 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G181900 [exp] 275 / 1e-86 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G114700 [exp] 234 / 3e-70 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G176100 [exp] 224 / 1e-65 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G121400 [exp] 220 / 5e-64 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G245400 [exp] 216 / 1e-63 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G066700 [exp] 207 / 3e-60 AT1G20300 213 / 5e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G098600 [exp] 205 / 2e-59 AT1G73400 670 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G053600 [exp] 206 / 3e-59 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G070200 [exp] 201 / 3e-58 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10030887 pacid=23155199 polypeptide=Lus10030887 locus=Lus10030887.g ID=Lus10030887.BGIv1.0 annot-version=v1.0 ATGGCCACCAGATTCCTCCTTCCTCTCCGCCGTGCTCATCTCCGCTTTCTCTCTTCTTTCGCAGCCGTGGAGACAATTCAAACCGAGCCCTTGCCGGAGC TGGTAAGCCAGATATCTCGCCTCCTCAGCGACCACCGGAACCCTCACCACGACTTGGAGCGCTCCCTCCGTACGTACCGCTCTAAACTCTCCTCCGAGGT AGTCGAGCAGGTCTTGAAGCGATGCAAGAATCTCGGATTCTCCGCACACAGATTCTTCCTCTGGGCCAACACCATTCCCGGGTTTCAACACACTCCCGAT AGCTTTCACATTTTGGTCGATATTTTGGGTGCCAGTAGGCAGTTTGCTATACTATGGGATTTCCTGATCGAGATCAGAGATTCTGTTTACAGTTTTCAAG TTAAAGCAGAGACATTTTGGCTTGTCTTTAGAGCTTACAGCAGGGCAAACCTGCCCGATGAAGCCATTCGAAGCTTTGGGAGAATGAGTGAGTTTGATTT GAATCCCAGAATCGAAGATGTGGATCAGCTTATCTATGTTCTATCCAAGCGTAAGCAAGTGAAGCAAGCACAGGCCTTTTTTGATCGAGTTAAGCATGAA TTGGAGCCAACGGTTAAGACTTACAGCATATTAGTGCGCGGGTGGGGTGATGTTGGGGATAATAAGTCTGCAAGGAAGGTGTTCGACGAAATGATACAAA GAGGTTGTGCGGTGGATGTGCTTGCCTACAACAGCTTGTTGGAGGCGTTATGTAAAGGAGGGAGTGTAGATGAAGCTTATAATATGTTTGGAGAATTGGG ATCCGTAGGAATCAAGCCTGATGCTTGTAGCTATGGGATCTTCATCCGTGCTTACTGCGAATCGGATGATATTCATTCTGCTTTTGGAGTGCTTGATCGG ATGAGAAGGTATGAACTTCTACCGAATGTGTTCACGTATAACTGCCTGATCAAGAAGCTATGTAAAACCGATTGTGTAGACGAAGCTTACCAGCTTCTGG ATGAGATGCTTGGGAAGGGAGTGTCTCCGGATAATTGGAGTTATAATGCGATATTAGCGTACCATTGCGAGCATACCGAGGTCAATAGAGCTACCAACCT GGTTTCTCGAATGGCTAAGGACGGTTGCTCGCCTGACCGGCATAGCTACAACATGGTGCTTAAATTGCTCATAAGGATGGGTCGGTTCGACAGGGCTACT CAGGTATGGGAAAGCATGGAGGAGAGGAAGTTTTTTCCGTCAGTTTCGACCTATGCGGTTATGATCCATGGCTTGTGCAAGAAGAAGGGGAAGCTTGAAG AGGCGTGCAAGTATTTCGAGTTGATGGTTGATGAGGGAGTTCCACCATACTCTTCCACTGTTGAGATGGTGAGGAACCGGCTTATGGGGTTTGGACTGAT GGATAACATTGAGATACTTGCTGGTAAGATGGAAAGAAGCTCTTGTTGTTTGATACAGGAGTTGGCTATTGAAATGAGAGGGAACAAGACTCATGTGCGG TCTAGAAAGGAAGAAACCGAGTCTGAAAGTGATTGA
AA sequence Show only first row Show all	>Lus10030887 pacid=23155199 polypeptide=Lus10030887 locus=Lus10030887.g ID=Lus10030887.BGIv1.0 annot-version=v1.0 MATRFLLPLRRAHLRFLSSFAAVETIQTEPLPELVSQISRLLSDHRNPHHDLERSLRTYRSKLSSEVVEQVLKRCKNLGFSAHRFFLWANTIPGFQHTPD SFHILVDILGASRQFAILWDFLIEIRDSVYSFQVKAETFWLVFRAYSRANLPDEAIRSFGRMSEFDLNPRIEDVDQLIYVLSKRKQVKQAQAFFDRVKHE LEPTVKTYSILVRGWGDVGDNKSARKVFDEMIQRGCAVDVLAYNSLLEALCKGGSVDEAYNMFGELGSVGIKPDACSYGIFIRAYCESDDIHSAFGVLDR MRRYELLPNVFTYNCLIKKLCKTDCVDEAYQLLDEMLGKGVSPDNWSYNAILAYHCEHTEVNRATNLVSRMAKDGCSPDRHSYNMVLKLLIRMGRFDRAT QVWESMEERKFFPSVSTYAVMIHGLCKKKGKLEEACKYFELMVDEGVPPYSSTVEMVRNRLMGFGLMDNIEILAGKMERSSCCLIQELAIEMRGNKTHVR SRKEETESESD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52640			Pentatricopeptide repeat (PPR)...		Lus10030887 [exp]	0	1
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10034126 [exp]	7.9	0.8188
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10003024 [exp]	10.7	0.8498
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10016788 [exp]	13.7	0.8260
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039423 [exp]	16.0	0.8265
AT4G34310			alpha/beta-Hydrolases superfam...		Lus10042664 [exp]	16.1	0.8145
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10019489 [exp]	19.2	0.8181
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Lus10042900 [exp]	25.1	0.7994
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Lus10028197 [exp]	25.7	0.8224
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10011054 [exp]	26.2	0.8242
AT3G01320		SNL1	SIN3-like 1 (.1.2)		Lus10014504 [exp]	26.2	0.8154

Compare expression of checked genes

Lus10030887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.