Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23460 425 / 4e-147 Pectin lyase-like superfamily protein (.1) AT1G70500 370 / 4e-125 Pectin lyase-like superfamily protein (.1) AT3G57510 249 / 8e-79 ADPG1 Pectin lyase-like superfamily protein (.1) AT3G15720 233 / 5e-72 Pectin lyase-like superfamily protein (.1.2) AT5G14650 232 / 5e-72 Pectin lyase-like superfamily protein (.1) AT1G80170 221 / 2e-67 Pectin lyase-like superfamily protein (.1) AT3G07970 211 / 8e-64 QRT2 QUARTET 2, Pectin lyase-like superfamily protein (.1) AT2G41850 208 / 7e-63 ADPG2, PGAZAT ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) AT1G02460 203 / 3e-60 Pectin lyase-like superfamily protein (.1) AT4G01890 199 / 7e-59 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030602 [exp] 538 / 0 AT1G23460 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029139 [exp] 484 / 6e-171 AT1G23460 574 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10042371 [exp] 235 / 1e-72 AT3G07970 432 / 5e-149 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10026299 [exp] 229 / 1e-71 AT3G07970 418 / 3e-145 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10036084 [exp] 228 / 4e-70 AT1G80170 491 / 2e-172 Pectin lyase-like superfamily protein (.1) Lus10019711 [exp] 218 / 3e-66 AT3G07970 461 / 1e-160 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10009994 [exp] 207 / 8e-62 AT1G02460 606 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038059 [exp] 207 / 1e-61 AT1G02460 542 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029511 [exp] 205 / 5e-61 AT3G07970 480 / 1e-167 QUARTET 2, Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G159000 [exp] 417 / 1e-143 AT1G23460 667 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G463000 [exp] 408 / 4e-140 AT1G23460 634 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G211900 [exp] 404 / 1e-138 AT1G23460 638 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.011G159801 [exp] 301 / 3e-102 AT1G23460 290 / 2e-97 Pectin lyase-like superfamily protein (.1) Potri.006G052700 [exp] 234 / 8e-73 AT3G07970 449 / 7e-156 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.015G088600 [exp] 226 / 5e-70 AT1G70500 323 / 1e-106 Pectin lyase-like superfamily protein (.1) Potri.001G171900 [exp] 223 / 3e-68 AT1G80170 506 / 1e-178 Pectin lyase-like superfamily protein (.1) Potri.016G054800 [exp] 222 / 6e-68 AT2G41850 421 / 7e-145 ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) Potri.009G060400 [exp] 221 / 1e-67 AT3G07970 514 / 0.0 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.014G115700 [exp] 216 / 8e-65 AT1G02460 593 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10030888 pacid=23155174 polypeptide=Lus10030888 locus=Lus10030888.g ID=Lus10030888.BGIv1.0 annot-version=v1.0 ATGGACAGGTTATTCATCATTTCTTTCATTGGCTTGCTGTTAGTGACCTATGGAGTTGCAGGCAACATTCTATATGACGAACTCACAACTCTTGAGAAGC TCGAAACCTTGGAAGAACACGAAGAAGTGGACGATGATGATTGCGATGTTATGTCGTGGAGGAGCGAACGGAGTGGCAAGGTTCTGGTGAATGTCGATAG CTTCGGTGCTGCTGGAGATGGAGTTTCTGATGACACTCAGGCCTTTGTAAAAGCTTGGAGCACTGCCTGTAATGCATCATCCAACGCAGTGTTCTTGGTT CCTCCAGGTCGCCAATATCTGGTAGCTGCGACGAAATTCAAAGGACCTTGTGGTGATAAGCTGATTGTCCAGGCATTAACCATTGATTCCAGCACTGGAG TGAAAGTCAAAGGGTTGACCATCAAGAACAGCCAACAGATGAATTTCGTGATCTCGAAATCCAGCTCAGTCCGAGTCTCTGATGTGTTAGTCTCGGCTCC TGGAGACAGTCCCAACACAGACGGGATCCACATTACTCAGTCGACTGATGTTGTTCTCCAAAACTGCAAAATCGGAACAGGGGATGATTGTGTCTCCATC GTCAATGGTAGTTCCAACATCAGGATGAAGAGACTCTACTGTGGACCGGGACACGGTATCAGCATTGGGAGCCTTGGACAGGACAACTCAACCGGGATCG TCACGGGAGTTATCCTAAACACAGCGCTCCTCCGGAACACGACTAATGGCCTCAGAATCAAGACATGGCAGGGTGGTAATGGGCATGTTCGCGGAGTTCG TTATGACAATGTCCAGATGGAGAATGTTGCAAATCCTATCATCATCGACCAGTTCTACTGTGATTCACCGAATGCCTGCCAGAACCAGACAGAAGCTGTG GAGATAAGCAAGATCATGTACAGAAACATAACCGGAACTTCCAAGAGTGCAAAAGCCATGAAGTTTGCTTGCAGCGATACGGTTCCATGCAGCGACATAG TCCTAATCAATGTCAACTTAGAAGGAAGAGATGGCACTGTGGAGACTTACTGCAACTCCGCCGAAGGGTCTGCATATGGCATCGTTCGTCCTTCAGTCGA CTGCCTATCATCGCACGATAAGGATTACGCTTCGACATCCAATCCACAGTTTACCAGAGACATGAACATTGTTGACGTTTCAGAAGCCACCAGTCAGGAC TTTGTCCACACAGAGCTCTAA
AA sequence Show only first row Show all	>Lus10030888 pacid=23155174 polypeptide=Lus10030888 locus=Lus10030888.g ID=Lus10030888.BGIv1.0 annot-version=v1.0 MDRLFIISFIGLLLVTYGVAGNILYDELTTLEKLETLEEHEEVDDDDCDVMSWRSERSGKVLVNVDSFGAAGDGVSDDTQAFVKAWSTACNASSNAVFLV PPGRQYLVAATKFKGPCGDKLIVQALTIDSSTGVKVKGLTIKNSQQMNFVISKSSSVRVSDVLVSAPGDSPNTDGIHITQSTDVVLQNCKIGTGDDCVSI VNGSSNIRMKRLYCGPGHGISIGSLGQDNSTGIVTGVILNTALLRNTTNGLRIKTWQGGNGHVRGVRYDNVQMENVANPIIIDQFYCDSPNACQNQTEAV EISKIMYRNITGTSKSAKAMKFACSDTVPCSDIVLINVNLEGRDGTVETYCNSAEGSAYGIVRPSVDCLSSHDKDYASTSNPQFTRDMNIVDVSEATSQD FVHTEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70500			Pectin lyase-like superfamily ...		Lus10030888 [exp]	0	1
AT1G23460			Pectin lyase-like superfamily ...		Lus10030602 [exp]	1.0	0.9913
AT1G76250			unknown protein		Lus10012274 [exp]	2.6	0.9762
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10041338 [exp]	2.8	0.9894
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10037381 [exp]	3.9	0.9878
AT3G49070			Protein of unknown function (D...		Lus10039258 [exp]	4.5	0.9779
					Lus10006423 [exp]	4.9	0.9772
AT5G22980		SCPL47	serine carboxypeptidase-like 4...		Lus10000147 [exp]	6.3	0.9830
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10015737 [exp]	6.6	0.9725
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Lus10041247 [exp]	7.1	0.9741
AT1G63120		ATRBL2	RHOMBOID-like 2 (.1)		Lus10017840 [exp]	7.1	0.9598

Compare expression of checked genes

Lus10030888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.