Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57560 420 / 1e-147 NAGK N-acetyl-l-glutamate kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030601 [exp] 273 / 4e-91 AT3G57560 181 / 4e-55 N-acetyl-l-glutamate kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G280100 [exp] 475 / 2e-169 AT3G57560 416 / 4e-146 N-acetyl-l-glutamate kinase (.1) Potri.018G001600 [exp] 468 / 1e-166 AT3G57560 417 / 1e-146 N-acetyl-l-glutamate kinase (.1) Potri.007G005300 [exp] 54 / 1e-07 AT4G37670 847 / 0.0 N-acetyl-l-glutamate synthase 2 (.1.2) Potri.014G005000 [exp] 52 / 3e-07 AT4G37670 825 / 0.0 N-acetyl-l-glutamate synthase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00696 [flax] [poplar] AA_kinase Amino acid kinase family
Representative CDS sequence Show only first row Show all	>Lus10030889 pacid=23155416 polypeptide=Lus10030889 locus=Lus10030889.g ID=Lus10030889.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCCTCTAAAGCAATCTTCTTCAACCCTCCGACCAAATCCCTAATTCCCTCAACCCTCTGCAAATCCTCATCACCACATTATCTGACTCTTA AACCCCGCCATCATCATCGCTGTTCATCAACCATACGAGCTTCCTCCTCCAAATCCCCCGAGCAGTTCAGGGTGGAGATCCTCTCCGAATCCCTACCCTA CATCCAGAAATTCAGGGGGAAAACCATCGTCGTCAAATACGGCGGTGCAGCCATGAAAGACCCGGACTTAAAGGCCTCTGTGGTCAGTGACCTCGTCCTT CTGTCCTGCGTCGGCCTCCGTCCGGTCCTGGTCCACGGTGGCGGCCCGGAGATCAACCACTGGCTGAAGCTTCTCAACATCGAGCCCCTCTTCCACGAAG GTCTCCGAGTGACCGACGCCAAGACAATGGAGATCGTGTCCATGGTTCTGGTGGGAAAGGTGAACAAGGATTTGGTGTCGTTGATCAATAAGGCAGGCGG CACCGCCGTGGGGCTGTCCGGTATGGACGGGCGGCTGCTGATGGCAAGGCCGAACCCTAATTCGGCCCAATTGGGATTCGTGGGAGACGTGGATCGGGTC GACCCGACAATGCTGCGCCCGCTGATCAACAACGGTCACATCCCGGTGATCGCGTCAGTGGCGGCGGACGAGATGGGGCAGTCGTACAACATAAATGCGG ACACGGTGGCGGGAGAGCTGGCGGCGGCGCTAGGAGCTGAGAAACTGATCTTGCTTACCGACGTGGCGGGGATACTAGAGGACAGAGACGACCCTGAGAG TTTGGTGAAAGAGACGGACATTGAAGGGGTGCATAAACTAATAGAGGAGAAGAAGGTTGCTGGAGGGATGATACCAAAGGTGAATTGCTGTGTGAGGTCG ATTTCTCAGGGGGTGAGAACTGCAAGCATTATCGATGGTAGGGTTCAGCACTCGTTGCTTCACGAGCTTATGTCGGAGGAAGGGTTGGGTACCATGATCA CTGCTTGA
AA sequence Show only first row Show all	>Lus10030889 pacid=23155416 polypeptide=Lus10030889 locus=Lus10030889.g ID=Lus10030889.BGIv1.0 annot-version=v1.0 MAAASKAIFFNPPTKSLIPSTLCKSSSPHYLTLKPRHHHRCSSTIRASSSKSPEQFRVEILSESLPYIQKFRGKTIVVKYGGAAMKDPDLKASVVSDLVL LSCVGLRPVLVHGGGPEINHWLKLLNIEPLFHEGLRVTDAKTMEIVSMVLVGKVNKDLVSLINKAGGTAVGLSGMDGRLLMARPNPNSAQLGFVGDVDRV DPTMLRPLINNGHIPVIASVAADEMGQSYNINADTVAGELAAALGAEKLILLTDVAGILEDRDDPESLVKETDIEGVHKLIEEKKVAGGMIPKVNCCVRS ISQGVRTASIIDGRVQHSLLHELMSEEGLGTMITA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Lus10030889 [exp]	0	1
AT5G13890			Family of unknown function (DU...		Lus10041505 [exp]	1.7	0.8762
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Lus10028250 [exp]	2.0	0.8247
AT4G38710			glycine-rich protein (.1.2)		Lus10012166 [exp]	3.0	0.8348
AT3G48690		ATCXE12	ARABIDOPSIS THALIANA CARBOXYES...		Lus10027909 [exp]	6.6	0.8567
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Lus10016414 [exp]	7.0	0.8100
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10020390 [exp]	7.5	0.7841
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007488 [exp]	12.2	0.8124
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10028449 [exp]	12.6	0.8005
AT1G08700		PS1	Presenilin-1 (.1)		Lus10020339 [exp]	17.2	0.8168
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10043185 [exp]	18.4	0.7836

Compare expression of checked genes

Lus10030889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.