Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27790 263 / 2e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G27300 226 / 9e-71 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030598 [exp] 476 / 1e-173 AT2G27790 263 / 5e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10030600 [exp] 418 / 8e-151 AT2G27790 272 / 6e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G167600 [exp] 300 / 9e-104 AT2G27790 269 / 2e-91 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G221301 [exp] 196 / 3e-63 AT2G27790 187 / 8e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030890 pacid=23155284 polypeptide=Lus10030890 locus=Lus10030890.g ID=Lus10030890.BGIv1.0 annot-version=v1.0 ATGCCTCGCTACAAAGACGAGCCTACCGCGGTTCGCGTTTATACAGTCTGCGACGAATCAAGGTCTGATCGGAAAAATCGTCCGATTCACAAAAAGTTCT GCAGATACTTAATCGTAAGGAACGTACCTGCTCTGGGTTGCGGCGACGACTTATCGAAGCTATTCGCCACCTACGGCGACGTCGAAGAAGTGAAACCGAT GGATGAAGAGGATTGCGAGCCGTTCACAGACGTCTACTGGATCAAATTTCGTCTTGCTAGCAATGCCAGGTTTGCAAAGAGGAAGTTGGAGGATAGTACA TTCTTAGGGAACAGGTTGCAAGTTGAATATGCTCCTCAGTTTGAGAGCCTTACAGACACCATGGATAAGCTAGAAGGGAGGAGAAAGGAAGTTCTTGCTA GACTGAATCCTGGACGATCTCAAGGAGCCAAAGTTCTTACTCAAGGTGGTTCTAGTACTGTTTCTCCTCAGCCATTGAATCTCAATCAGTCCTGTGCTCG AGGATCGGAAGGGAGTTTGCAGAGAAATGATGCACCGATGTCAAGGGTTTCTTCTGATAAGGACTACTTTCCATCTCGATCCATGAACGAGACCGTTAAA TCAGTTAGGGAGAAGCTTGATAAGATAGAGTCAAGCTCACAGCAGCAAGCAGGACCTGCAGCTAAGAAAACTAGATTGGACAACAGAAGACGGATTTAG
AA sequence Show only first row Show all	>Lus10030890 pacid=23155284 polypeptide=Lus10030890 locus=Lus10030890.g ID=Lus10030890.BGIv1.0 annot-version=v1.0 MPRYKDEPTAVRVYTVCDESRSDRKNRPIHKKFCRYLIVRNVPALGCGDDLSKLFATYGDVEEVKPMDEEDCEPFTDVYWIKFRLASNARFAKRKLEDST FLGNRLQVEYAPQFESLTDTMDKLEGRRKEVLARLNPGRSQGAKVLTQGGSSTVSPQPLNLNQSCARGSEGSLQRNDAPMSRVSSDKDYFPSRSMNETVK SVREKLDKIESSSQQQAGPAAKKTRLDNRRRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030890 [exp]	0	1
AT5G25360			unknown protein		Lus10002164 [exp]	1.7	0.7615
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10023482 [exp]	11.5	0.7455
AT3G07750			3'-5'-exoribonuclease family p...		Lus10006382 [exp]	12.0	0.7538
AT3G59490			unknown protein		Lus10013685 [exp]	22.2	0.7091
AT2G38180			SGNH hydrolase-type esterase s...		Lus10027790 [exp]	23.2	0.6556
AT1G06260			Cysteine proteinases superfami...		Lus10017674 [exp]	33.6	0.7071
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10006623 [exp]	34.0	0.6502
AT1G60010			unknown protein		Lus10029193 [exp]	34.9	0.6961
AT4G17486			PPPDE putative thiol peptidase...		Lus10019437 [exp]	38.1	0.7065
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10000565 [exp]	39.2	0.6974

Compare expression of checked genes

Lus10030890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.