Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10650 257 / 1e-85 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT1G60610 251 / 1e-82 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2), SBP (S-ribonuclease binding protein) family protein (.3) AT1G45976 151 / 6e-44 SBP1 S-ribonuclease binding protein 1 (.1) AT4G17680 126 / 5e-35 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT1G32740 120 / 6e-32 SBP (S-ribonuclease binding protein) family protein (.1) AT3G12920 112 / 7e-29 BRG3 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) AT1G79110 107 / 4e-27 BRG2 BOI-related gene 2, zinc ion binding (.1.2) AT5G47050 105 / 2e-26 SBP (S-ribonuclease binding protein) family protein (.1) AT4G35070 100 / 1e-24 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT5G45100 95 / 8e-23 BRG1 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030597 [exp] 466 / 4e-167 AT1G10650 380 / 3e-132 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10030599 [exp] 465 / 6e-167 AT1G10650 380 / 4e-132 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10013027 [exp] 343 / 6e-119 AT1G10650 382 / 3e-133 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10029136 [exp] 321 / 2e-110 AT1G10650 314 / 7e-107 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10001131 [exp] 158 / 3e-46 AT1G45976 407 / 7e-143 S-ribonuclease binding protein 1 (.1) Lus10018294 [exp] 105 / 4e-26 AT5G45100 266 / 3e-88 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10031780 [exp] 104 / 7e-26 AT3G12920 260 / 3e-85 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Lus10040613 [exp] 102 / 3e-25 AT5G45100 264 / 3e-87 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10014118 [exp] 98 / 1e-24 AT4G35070 171 / 7e-54 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G042200 [exp] 319 / 3e-109 AT1G10650 393 / 2e-137 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.012G082200 [exp] 239 / 4e-78 AT1G10650 266 / 2e-87 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.014G027000 [exp] 156 / 2e-45 AT1G45976 380 / 2e-132 S-ribonuclease binding protein 1 (.1) Potri.002G124700 [exp] 152 / 4e-44 AT1G45976 378 / 2e-131 S-ribonuclease binding protein 1 (.1) Potri.001G148600 [exp] 140 / 2e-39 AT1G32740 221 / 4e-70 SBP (S-ribonuclease binding protein) family protein (.1) Potri.003G085800 [exp] 134 / 6e-37 AT1G32740 220 / 9e-70 SBP (S-ribonuclease binding protein) family protein (.1) Potri.015G118000 [exp] 105 / 2e-26 AT5G45100 259 / 2e-85 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.001G439600 [exp] 104 / 7e-26 AT3G12920 256 / 1e-83 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Potri.011G142700 [exp] 100 / 1e-24 AT3G12920 233 / 1e-74 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Potri.004G175500 [exp] 99 / 3e-24 AT4G35070 142 / 1e-41 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030891 pacid=23155304 polypeptide=Lus10030891 locus=Lus10030891.g ID=Lus10030891.BGIv1.0 annot-version=v1.0 ATGCTTGGAGGCAACAGTGGCAATCCCATGCTTCCTGTTTTCTTGGACGAGAACCGAATTCCTTACCAGAACAACCCTTCAAATCAGCTCCAGCTATTTG TAACGTACATTGCGGGGTTTCAGTGCCAGCTGGATTACGAGGATGAGCGAATGTCGTCTCTTCCTTCTGCTAGTGGAAGCAGGGCAGCAGCACCGTCTGT GATCTTGTCGCTCGGGGACAATATCCGGACTGAACTCGATCGCCAGAAAGAGGAATTCGATCAGTACATCAAACTTCAGGAGGAGCATTTGGCTAAGGGT GTGAGAGACATCAAGCAGAGACATGTGGCATCGTTTCTAGCATCGATCGAGAAGGGCGTTGCAAAGAAGATTCGTGAGAAAGACATAGAGATTGACAACA TGAACCGTCGGAACAAAGAGTTGATCGACAGAATCAAGCAAGTGGCTGCCGAAGCTCAGAATTGGCATTATAGAGCGAAATACAACGAATCGCTCGTGAA TGTCCTCAAGACCAATCTCCAGCAGGCGATTTCTCAGGGTGCTGATCAAGTGAAGGAAGGATTCGGAGACAGTGAGTTTGATGATGCTGCTTCCTGCATT GATCCCAACAACAACTACCTCAATGTCGGGCCTTCAACGAGACCTATGTCGAGAAAAGAGCGGATGACTACTTGCAGATCGTGCAAAGCAAAGGAGGTTT CGGTACTGTTGATGCCGTGCAGGCATCTGTGTTTATGTATGGATTGTGATGTGTTTATCAATGTTTGCCCTGTATGCCAGTTGATCAAAACTACCAGCGT CCAAGTATACTTGTCGTAA
AA sequence Show only first row Show all	>Lus10030891 pacid=23155304 polypeptide=Lus10030891 locus=Lus10030891.g ID=Lus10030891.BGIv1.0 annot-version=v1.0 MLGGNSGNPMLPVFLDENRIPYQNNPSNQLQLFVTYIAGFQCQLDYEDERMSSLPSASGSRAAAPSVILSLGDNIRTELDRQKEEFDQYIKLQEEHLAKG VRDIKQRHVASFLASIEKGVAKKIREKDIEIDNMNRRNKELIDRIKQVAAEAQNWHYRAKYNESLVNVLKTNLQQAISQGADQVKEGFGDSEFDDAASCI DPNNNYLNVGPSTRPMSRKERMTTCRSCKAKEVSVLLMPCRHLCLCMDCDVFINVCPVCQLIKTTSVQVYLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10030891 [exp]	0	1
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Lus10036274 [exp]	5.5	0.9435
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Lus10021659 [exp]	9.5	0.9156
AT1G69550			disease resistance protein (TI...		Lus10017420 [exp]	10.5	0.8954
AT4G26060			Ribosomal protein L18ae family...		Lus10027625 [exp]	11.4	0.9366
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10040814 [exp]	11.6	0.9301
AT1G16770			unknown protein		Lus10037300 [exp]	12.2	0.9074
AT4G27290			S-locus lectin protein kinase ...		Lus10014809 [exp]	13.0	0.9231
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10022102 [exp]	15.0	0.9183
AT1G30110		ATNUDX25	nudix hydrolase homolog 25 (.1...		Lus10003714 [exp]	15.7	0.9075
					Lus10017210 [exp]	16.4	0.9299

Compare expression of checked genes

Lus10030891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.