Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70505 246 / 3e-80 unknown protein AT1G10660 223 / 1e-71 unknown protein AT5G62960 210 / 4e-66 unknown protein AT3G27770 147 / 2e-42 unknown protein AT2G47115 99 / 6e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030594 [exp] 499 / 0 AT1G70505 261 / 6e-86 unknown protein Lus10029133 [exp] 277 / 1e-91 AT1G10660 338 / 5e-115 unknown protein Lus10042109 [exp] 189 / 5e-58 AT5G62960 397 / 1e-138 unknown protein Lus10027692 [exp] 184 / 3e-56 AT5G62960 355 / 2e-122 unknown protein Lus10002386 [exp] 181 / 2e-55 AT5G62960 320 / 5e-109 unknown protein Lus10014556 [exp] 171 / 4e-51 AT5G62960 305 / 3e-102 unknown protein Lus10032130 [exp] 169 / 2e-50 AT5G62960 303 / 2e-101 unknown protein Lus10013029 [exp] 162 / 5e-45 AT1G23400 658 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10009991 [exp] 134 / 2e-37 AT1G10660 246 / 3e-80 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G042600 [exp] 280 / 6e-94 AT1G10660 372 / 1e-129 unknown protein Potri.012G082400 [exp] 226 / 1e-72 AT5G62960 387 / 1e-134 unknown protein Potri.015G078200 [exp] 224 / 6e-72 AT5G62960 382 / 8e-133 unknown protein Potri.001G347400 [exp] 186 / 3e-57 AT3G27770 314 / 9e-107 unknown protein Potri.002G190200 [exp] 139 / 5e-39 AT2G47115 344 / 1e-118 unknown protein Potri.014G115200 [exp] 132 / 3e-36 AT2G47115 340 / 4e-117 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030895 pacid=23155403 polypeptide=Lus10030895 locus=Lus10030895.g ID=Lus10030895.BGIv1.0 annot-version=v1.0 ATGTTGACTTTGTTAGCAGGATCGTCGAACCGGACTTGGCAGCCGATCATGACAGCCCATACGACTGAGCCGAGCTATTGGTTGAACTGGAGGTTCGCCA TTTGTGGAGTTTTCATTGCAGTAATCATGGCTCTATCAGGTCTTCTGATATGGAAGTATGAAGGGTCCAAGGAATCGGAGTTCGAATCCGAAAGAAGAGA AAGCCGCCGGTCACCAAGTGTTGGATCCTTGTATAAGGATGAAGCTGGGAGAACTTGTATGAAGACAATTCATCCTATTTGGTTGCTAGGTTTCAGGATT GTTGCCTTTGTTATTCTCTTCTGTTTGCTCACCACGAATACTGTCGTTGATGGAGGAGGCATCTTCTTCTTCTATACTCAGTGGACATTCTCTTTGGTGA CCATTTATTTCGGATATGGATCAGCAATGTCGATTTACGGATGTTGCAAAGGTCATGATACTTCGGCTTTGGATACTGAGAGAGGTAACTACATTGCTCC GGATCTTGGAGAATTCGGAGATTCATCCAGCCGTGTAAAGAGTGCAGCTTTGGATCAAGAACAAGATCCGTGCTCTGAACAAAAGCAAATTGCTGCTGCA TGGGGATACGTGTTTCAAATCATCTTCCAGACTTGTGCAGGAGCTGTGGTGCTCACTGATACTGTGTTCTGGTTCATTCTTTATCCCTTCCTAATGGCTG CAGATTTCAAGCTTGATTTCATAAATATTTGTATGCATTCAGTCAATGCGATTTTCCTCCTTGGCGACACGATATTGAACGGGATGGTACCTTGGAGTGG GAGTGATGCATATTCCTTGTTACGGGATCTTTGCTCTTATAGTTAG
AA sequence Show only first row Show all	>Lus10030895 pacid=23155403 polypeptide=Lus10030895 locus=Lus10030895.g ID=Lus10030895.BGIv1.0 annot-version=v1.0 MLTLLAGSSNRTWQPIMTAHTTEPSYWLNWRFAICGVFIAVIMALSGLLIWKYEGSKESEFESERRESRRSPSVGSLYKDEAGRTCMKTIHPIWLLGFRI VAFVILFCLLTTNTVVDGGGIFFFYTQWTFSLVTIYFGYGSAMSIYGCCKGHDTSALDTERGNYIAPDLGEFGDSSSRVKSAALDQEQDPCSEQKQIAAA WGYVFQIIFQTCAGAVVLTDTVFWFILYPFLMAADFKLDFINICMHSVNAIFLLGDTILNGMVPWSGSDAYSLLRDLCSYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70505			unknown protein		Lus10030895 [exp]	0	1
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032415 [exp]	5.9	0.9210
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029269 [exp]	6.3	0.9353
AT4G35160			O-methyltransferase family pro...		Lus10013945 [exp]	7.7	0.9204
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10039627 [exp]	8.8	0.9124
AT4G24000		ATCSLG2	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032416 [exp]	8.9	0.9099
AT1G11340			S-locus lectin protein kinase ...		Lus10013244 [exp]	9.8	0.9240
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10035260 [exp]	10.8	0.9314
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10007318 [exp]	11.0	0.9275
AT1G16770			unknown protein		Lus10037300 [exp]	12.8	0.9010
AT3G50770		CML41	calmodulin-like 41 (.1)		Lus10032734 [exp]	13.0	0.9066

Compare expression of checked genes

Lus10030895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.