Plant FIBer expression Database

Lus10030897 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10670 761 / 0 ACLA-1 ATP-citrate lyase A-1 (.1.2.3.4)
AT1G60810 759 / 0 ACLA-2 ATP-citrate lyase A-2 (.1)
AT1G09430 728 / 0 ACLA-3 ATP-citrate lyase A-3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013032
[exp]
823 / 0 AT1G60810 766 / 0.0 ATP-citrate lyase A-2 (.1)
Lus10030592
[exp]
791 / 0 AT1G60810 709 / 0.0 ATP-citrate lyase A-2 (.1)
Lus10029129
[exp]
486 / 7e-172 AT1G60810 627 / 0.0 ATP-citrate lyase A-2 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G188900
[exp]
786 / 0 AT1G60810 725 / 0.0 ATP-citrate lyase A-2 (.1)
Potri.010G042700
[exp]
754 / 0 AT1G10670 716 / 0.0 ATP-citrate lyase A-1 (.1.2.3.4)
Potri.013G004400
[exp]
742 / 0 AT1G09430 790 / 0.0 ATP-citrate lyase A-3 (.1)
Potri.005G004900
[exp]
741 / 0 AT1G09430 795 / 0.0 ATP-citrate lyase A-3 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0179 ATP-grasp PF08442 ATP-grasp_2 ATP-grasp domain
Representative CDS sequence
>Lus10030897 pacid=23155259 polypeptide=Lus10030897 locus=Lus10030897.g ID=Lus10030897.BGIv1.0 annot-version=v1.0
ATGGCGCGGAAGAAGATCAGAGAGTACGACTCCAAGAGGCTTCTCAAGGAGCATTTCAAGCGCCTCTCCGGCTCCGATCTGCCCATCAAATCCGCCCAAG
TTAAGGAATCGACTGATGTGTTGGAGCTGGCGGAGACTGAGCCATGGCTGTTGAACGGGAAGCTGGTGGTGAAACCGGACATGCTGTTTGGGAAGCGTGG
CAAAAGTGGGCTTGTGGCGTTGAATCTGGATCTGGCTCAAGTTGGTTCCTTTGTGAAAGAACGGCTCGGGAAAGAGGTTGAGATGAGTGGATGTAAAGGA
CCCATTACTACTTTCATTGTGGAGCCGTTTATCCCTCATGATCAGGAGTTTTACCTCAACATTGTGTCTGAGAGGCTTGGATGCAGTGTTAGCTTTTCGG
AATGTGGAGGGATTGAGATTGAAGAGAATTGGGATAAGGTTAAGACGATCTTTGTTCCGACTGGGGAGTCCTGGACTTCAGAGATCTGTGCTCCACTCAT
TGCTACATTGCCTTTGGAGATTAGAGGCGAGATCAACAAGTTTATTTCGGTGGTCTATACTCTATTTCAAGATCTTGACTTTACGTTCCTGGAGATGAAC
CCTTTCACTCTGGTTGATGGAAAGCCTTATCCTTTGGACATGAGGGGGGAACTTGATGACACTGCTACATTCAAGAACTTCAAGAAGTGGGGAAACATTG
AGTTCCCGCTACCATTCGGGAGAGTGATGAGTGCCACGGAAAGCTTCATCCACCGTCTAGATGAGAAGACAAGTGCATCTTTGAAGTTCACAATTTTGAA
CCCAAAGGGGAGAATCTGGACCATGGTGGCTGGTGGAGGTGCGAGTGTGATCTATGCTGACACAGTAGGAGATCTTGGGTATGCTTCAGAGCTGGGGAAC
TATGCGGAGTACAGTGGCGCACCGAACGAAGAGGAAGTTCTGCAGTATGCCAGAGTTGTGATTGATTGTGCAACATCTGATCCTGATGGCCAAAAGAGAG
CCCTTGTTGTCGGAGGAGGGATTGCAAACTTCACCGACGTCGCTGCCACCTTCAATGGCATAATCCGAGCGATGAAGGAGAAGGAATCGAAGCTGAAAGC
TGCCAGGATGCACATATTTGTAAGGAGAGGAGGTCCAAACTACCAGAAGGGTCTCGCCAGAATGAGGGCACTCGGGGGAGAAATCGGGATTCACATTGAG
GTTTATGGTCCGGAAGCGACAATGACTGGTATCTGCAAGCAGGCTATTGAGTGCATCTCTGTTTCTGCATAA
AA sequence
>Lus10030897 pacid=23155259 polypeptide=Lus10030897 locus=Lus10030897.g ID=Lus10030897.BGIv1.0 annot-version=v1.0
MARKKIREYDSKRLLKEHFKRLSGSDLPIKSAQVKESTDVLELAETEPWLLNGKLVVKPDMLFGKRGKSGLVALNLDLAQVGSFVKERLGKEVEMSGCKG
PITTFIVEPFIPHDQEFYLNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGESWTSEICAPLIATLPLEIRGEINKFISVVYTLFQDLDFTFLEMN
PFTLVDGKPYPLDMRGELDDTATFKNFKKWGNIEFPLPFGRVMSATESFIHRLDEKTSASLKFTILNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN
YAEYSGAPNEEEVLQYARVVIDCATSDPDGQKRALVVGGGIANFTDVAATFNGIIRAMKEKESKLKAARMHIFVRRGGPNYQKGLARMRALGGEIGIHIE
VYGPEATMTGICKQAIECISVSA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G60810 ACLA-2 ATP-citrate lyase A-2 (.1) Lus10030897
[exp]
0 1
AT2G40320 TBL33 TRICHOME BIREFRINGENCE-LIKE 33... Lus10007529
[exp]
2.4 0.9622
AT4G34050 CCoAOMT1 caffeoyl coenzyme A O-methyltr... Lus10002837
[exp]
5.3 0.9693
AT5G26330 Cupredoxin superfamily protein... Lus10021925
[exp]
7.1 0.9689
AT3G19450 CAD-C, ATCAD4 CINNAMYL ALCOHOL DEHYDROGENASE... Lus10027864
[exp]
8.0 0.9626
AT2G45300 RNA 3'-terminal phosphate cycl... Lus10000788
[exp]
9.8 0.9656
AT5G18930 BUD2, SAMDC4 BUSHY AND DWARF 2, Adenosylmet... Lus10041241
[exp]
11.0 0.9372
AT1G68795 CLE12 CLAVATA3/ESR-RELATED 12 (.1) Lus10041496
[exp]
12.0 0.9555
AT1G02570 unknown protein Lus10010004
[exp]
13.0 0.9605
AT3G62020 GLP10 germin-like protein 10 (.1.2) Lus10038014
[exp]
13.2 0.9625
AT1G48850 EMB1144 embryo defective 1144, chorism... Lus10037189
[exp]
13.9 0.9583

Lus10030897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.