Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60800 924 / 0 NIK3 NSP-interacting kinase 3 (.1) AT3G25560 785 / 0 NIK2 NSP-interacting kinase 2 (.1.2.3) AT5G16000 762 / 0 NIK1 NSP-interacting kinase 1 (.1) AT2G23950 696 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G30520 669 / 0 SARK SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) AT5G45780 625 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G71830 598 / 0 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT2G13790 566 / 0 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT4G33430 551 / 0 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT5G10290 518 / 7e-178 leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030591 [exp] 1233 / 0 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10034350 [exp] 781 / 0 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10034413 [exp] 781 / 0 AT5G16000 937 / 0.0 NSP-interacting kinase 1 (.1) Lus10019145 [exp] 779 / 0 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1) Lus10005103 [exp] 771 / 0 AT5G16000 998 / 0.0 NSP-interacting kinase 1 (.1) Lus10019963 [exp] 694 / 0 AT2G23950 907 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015484 [exp] 689 / 0 AT2G23950 910 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007292 [exp] 612 / 0 AT5G45780 801 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10020962 [exp] 577 / 0 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G043200 [exp] 1024 / 0 AT1G60800 925 / 0.0 NSP-interacting kinase 3 (.1) Potri.008G188800 [exp] 1010 / 0 AT1G60800 930 / 0.0 NSP-interacting kinase 3 (.1) Potri.004G108200 [exp] 797 / 0 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1) Potri.008G110300 [exp] 795 / 0 AT3G25560 918 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.017G108000 [exp] 792 / 0 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.010G134100 [exp] 783 / 0 AT3G25560 927 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.006G179400 [exp] 704 / 0 AT2G23950 889 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G101300 [exp] 676 / 0 AT4G30520 837 / 0.0 SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) Potri.004G059100 [exp] 657 / 0 AT5G45780 837 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G068700 [exp] 653 / 0 AT5G45780 819 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030898 pacid=23155343 polypeptide=Lus10030898 locus=Lus10030898.g ID=Lus10030898.BGIv1.0 annot-version=v1.0 ATGGAAGGGAGGAAGAGTTTCAGGATTTGGGAGTTTGGGTTACTGGTTTTGGCAGTAATGGAGATATGCTCTGCTACTCTTTCTCCTAGTGGTATTAACT ATGAAGTGGTGGCTTTGGTGGCAATAAGGAATGCTTTACACGACCCTTACAATGTTCTGGACAATTGGGATGCTAATTCTGTGGATCCTTGTAGCTGGAG GATGGTTACTTGCTCATCAGATGGATATGTTTCTGCTCTGGGACTTCCCAGTCAGAGCTTGTCTGGGACTTTATCACCTTCCATTGGCAACCTTACTAAC TTGCAATCCGTGTTGCTGCAAAACAATGCTATCTCAGGTCCTATACCTGGCTCAATTGGGAAACTGGAGAAGCTTCAGACTCTTGATCTCTCCAACAACT CGTTCTACGGAGAGATTCCGGCTTCGTTAGGGGATCTCAAGATGCTGAATTATCTGCGCTTGAACAACAACAGCCTTACTGGACCTTGCCCTCAGTCTCT TTCCAATATCCAAGCCCTTGTGGATCTCTCCTTCAACAATTTGAGTGGTTCACTGCCCAAAATATCAGCAAGAACTTTCAAAGTCATAGGCAATCCTCTA CTGTGTGGACTTAAGGATGCTAACAACTGTTCTGCTGTATTTCCAGAACCCCTCTCTCTCCCTCCTGAAGCTGATTCAGATTCTAAAACAAAGAGTCACC ATGTAGCCATTGCTTTTGGTGCAAGCTTTGGTGCTGCATTCGCCATCATTCTGATCGCTGGTTTCCTTATTTGGTGGAGATATAGGCATAACAAGCAAAT TTTCTTCGATGTGAATGAGCAATATGATCCTGAAGTGAGGCTAGGCCATTTAAGAAGATACACCTTCAAGGAGCTTAGAAATGCGACCGATCACTTCAAC GCCAAGAACATACTAGGGAAAGGCGGGTTCGGAATTGTGTACAAAGGATGTCTGAACGATGGGAGCATAGTGGCTGTGAAAAGGCTGAAAGATTACAATG CAGTAGGTGGTGAAATCCAGTTCCAAACCGAAGTAGAGACCATTAGCTTGGCTGTCCATCGCAACCTCCTTAGGCTATCCGGTTTCTGCACGACCGAGAA CGAACGTATTCTTGTATATCCTTATATGTCGAATGGCAGTGTTGCATCTCGATTAAAAGATTATATCCATGGAAGGCCAGCTCTTGATTGGGGAAGGAGG AAGAAGATAGCTTTGGGGACAGCTAGAGGTTTACTTTACCTACACGAACAATGTGACCCGAAAATCATTCACAGGGACGTTAAGGCAGCTAACATATTGT TGGATGAAGATTTCGAGGCAGTTGTCGGAGATTTCGGGCTAGCAAAGCTGTTAGACCACAGGGATTCACACGTTACCACAGCTGTACGTGGCACCGTTGG CCACATTGCACCGGAATACTTGTCGACCGGCCAGTCGTCAGAGAAGACCGATGTTTTCGGTTTTGGTATCCTCCTCCTTGAGCTAATCACGGGACAGAAG GCACTTGATTTCGGAAGGGCAGCACACCAGAAAGGTGTAATGCTTGACTGGGTGAAGAAGCTTCACCAGGAAGGAAAGCTACAGCTAATGGTGGACAAAG TGCTGAGAGGGAATCTGGACCGGGTCGAAGTCGAAGAGATGGTCCAAGTGGCGCTGTTGTGCACACAGTTCAACCCCATCCACCGTCCGAAGATGGCGGA GGTGTTGAAGATGTTGGAAGGGGATGGGTTGGCTGAGAAATGGGAGGCATCTCAGGACCACCTGGAAACACCAAGGTTCATTAGAACATGTGAATACTCG CTTCCTATTCAGAGATATTCGGACTACATTGACGAGTCCTCGCTTGCGGTCGAAGCAATGGAGCTGTCCGGTCCTCGATGA
AA sequence Show only first row Show all	>Lus10030898 pacid=23155343 polypeptide=Lus10030898 locus=Lus10030898.g ID=Lus10030898.BGIv1.0 annot-version=v1.0 MEGRKSFRIWEFGLLVLAVMEICSATLSPSGINYEVVALVAIRNALHDPYNVLDNWDANSVDPCSWRMVTCSSDGYVSALGLPSQSLSGTLSPSIGNLTN LQSVLLQNNAISGPIPGSIGKLEKLQTLDLSNNSFYGEIPASLGDLKMLNYLRLNNNSLTGPCPQSLSNIQALVDLSFNNLSGSLPKISARTFKVIGNPL LCGLKDANNCSAVFPEPLSLPPEADSDSKTKSHHVAIAFGASFGAAFAIILIAGFLIWWRYRHNKQIFFDVNEQYDPEVRLGHLRRYTFKELRNATDHFN AKNILGKGGFGIVYKGCLNDGSIVAVKRLKDYNAVGGEIQFQTEVETISLAVHRNLLRLSGFCTTENERILVYPYMSNGSVASRLKDYIHGRPALDWGRR KKIALGTARGLLYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQK ALDFGRAAHQKGVMLDWVKKLHQEGKLQLMVDKVLRGNLDRVEVEEMVQVALLCTQFNPIHRPKMAEVLKMLEGDGLAEKWEASQDHLETPRFIRTCEYS LPIQRYSDYIDESSLAVEAMELSGPR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Lus10030898 [exp]	0	1
AT3G20430			unknown protein		Lus10007452 [exp]	2.0	0.7062
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033954 [exp]	8.2	0.6666
AT3G13225			WW domain-containing protein (...		Lus10010579 [exp]	23.4	0.6507
AT3G48120			unknown protein		Lus10042150 [exp]	30.9	0.6316
AT2G43950		OEP37, ATOEP37	ARABIDOPSIS CHLOROPLAST OUTER ...		Lus10003862 [exp]	42.0	0.6571
AT5G53900			Serine/threonine-protein kinas...		Lus10041936 [exp]	51.4	0.6305
AT2G25570			binding (.1.2.3)		Lus10030074 [exp]	58.7	0.6157
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Lus10031929 [exp]	62.4	0.6127
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10003220 [exp]	64.2	0.6134
AT2G44430			DNA-binding bromodomain-contai...		Lus10010335 [exp]	77.4	0.6271

Compare expression of checked genes

Lus10030898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.