Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60790 226 / 3e-70 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT5G06700 154 / 1e-42 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT5G49340 149 / 1e-41 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT5G20590 144 / 1e-39 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT3G12060 142 / 2e-38 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT5G19160 137 / 3e-37 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G62390 137 / 7e-37 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT3G06080 127 / 4e-34 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT1G48880 128 / 5e-34 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 (.1) AT5G06230 122 / 4e-32 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013035 [exp] 319 / 6e-106 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10029126 [exp] 252 / 2e-80 AT1G60790 527 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10004159 [exp] 162 / 1e-45 AT5G06700 552 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10021066 [exp] 160 / 7e-45 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10011932 [exp] 155 / 1e-43 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10037726 [exp] 151 / 3e-42 AT5G49340 435 / 3e-150 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Lus10027637 [exp] 150 / 6e-42 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10016856 [exp] 139 / 4e-40 AT5G49340 155 / 7e-45 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Lus10002430 [exp] 140 / 8e-38 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G043300 [exp] 247 / 3e-78 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.016G059300 [exp] 165 / 2e-46 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.001G010900 [exp] 164 / 2e-46 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.006G071500 [exp] 160 / 1e-45 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.006G193900 [exp] 162 / 3e-45 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.008G108500 [exp] 159 / 4e-45 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.T171301 [exp] 159 / 4e-45 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.018G133000 [exp] 157 / 2e-44 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.002G195800 [exp] 140 / 8e-38 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.002G071900 [exp] 134 / 2e-36 AT1G48880 478 / 1e-167 TRICHOME BIREFRINGENCE-LIKE 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030899 pacid=23155182 polypeptide=Lus10030899 locus=Lus10030899.g ID=Lus10030899.BGIv1.0 annot-version=v1.0 ATGGAAACCAAGAAACTCGGATTCCAATCTGGGTTTTCCCTCTGGATAGCCACCACCTTCTTCCTCTTCATCTCCGTAATCCTCCTCACTACTTCCTTTC AGGGTCGTGTCTCCTTCCAAGGCGTCCGTGATGTAAACTCCTCCTCTGCTTCGACGATTGTTTCTTCATGGCCATTCACTATCCCCGCTTCTTACTTCCC TGCTACTCAACCCAAATCCACCGCTACCAACGCCTTTGGAGTCGTTCTTGGGAAAGTGAATCTGGATAAAAATGGAAGCGTGGAAAGTGTTCGAGGAAAT GTCACAGAGAGTAAGAGCTTGTCTGGTGCAGGAATTTCGAGTCGAGATGGAAGCTCGGAAAGTGTTCGACGAAATGTCACAGAGAGTAAGAGCTCGCCTG TTACAGGAGTTGCAGATGCAGGGCAAGTTGGCCGATCCAATAATGGATATGTAGATCGAGGGGAAGATGTGAAACAGAGCATAGACGAAGATTATTACCA AAAATGTGATATATTTGATGGGAGGTGGGAGAGGGATGAATCCAAGCCTTATTACCCTGCTGGTTCTTGTCCTCATATTGATAGGGATTTCAATTGTCAT GCCAATGGGAGGCCTGATTCTGGATTTGTTAAGTGGAGATGGCAGTCAAATGGCTGTGACATCCCAAGGTTGAATGCGACTGATTTCCTAGAGAGATTAA GAGGGAAAAAGATGGTTTTTGTGGGGGATTCTCTGAACAGAAATATGTGGGAATCTTTGGTGTGTATACTCCGCCATAGTATCAGCAACAAGAAGAAAGT TCATGAGATATCAGGGAAGACTGAGTTTAAGAAGAAAGGTTTCTACGCCTTCTTGTTCGAGGCAAGTTGTTGGAAATGA
AA sequence Show only first row Show all	>Lus10030899 pacid=23155182 polypeptide=Lus10030899 locus=Lus10030899.g ID=Lus10030899.BGIv1.0 annot-version=v1.0 METKKLGFQSGFSLWIATTFFLFISVILLTTSFQGRVSFQGVRDVNSSSASTIVSSWPFTIPASYFPATQPKSTATNAFGVVLGKVNLDKNGSVESVRGN VTESKSLSGAGISSRDGSSESVRRNVTESKSSPVTGVADAGQVGRSNNGYVDRGEDVKQSIDEDYYQKCDIFDGRWERDESKPYYPAGSCPHIDRDFNCH ANGRPDSGFVKWRWQSNGCDIPRLNATDFLERLRGKKMVFVGDSLNRNMWESLVCILRHSISNKKKVHEISGKTEFKKKGFYAFLFEASCWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030899 [exp]	0	1
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10035579 [exp]	1.7	0.9252
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030900 [exp]	2.8	0.9252
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10010957 [exp]	5.3	0.9167
AT3G08900		RGP3	reversibly glycosylated polype...		Lus10000646 [exp]	5.7	0.8923
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10011157 [exp]	7.9	0.8744
AT4G02320			Plant invertase/pectin methyle...		Lus10008203 [exp]	8.1	0.9231
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10038435 [exp]	8.4	0.9112
AT5G28850			Calcium-binding EF-hand family...		Lus10032772 [exp]	8.9	0.9022
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10038973 [exp]	11.0	0.9054
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10001733 [exp]	12.7	0.9028

Compare expression of checked genes

Lus10030899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.