Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60790 369 / 8e-127 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT5G06700 306 / 3e-101 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G12060 302 / 2e-100 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT5G49340 275 / 7e-91 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT5G20590 269 / 4e-88 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT3G62390 239 / 1e-76 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT3G06080 208 / 7e-65 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G19160 208 / 7e-65 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G11570 184 / 1e-55 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT5G06230 179 / 1e-54 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029126 [exp] 425 / 7e-149 AT1G60790 527 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10013035 [exp] 406 / 7e-141 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10030590 [exp] 310 / 1e-107 AT1G60790 226 / 7e-71 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10021066 [exp] 290 / 1e-94 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10011932 [exp] 253 / 2e-82 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10027637 [exp] 252 / 8e-82 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10002430 [exp] 227 / 1e-71 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10037726 [exp] 223 / 2e-70 AT5G49340 435 / 3e-150 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Lus10034039 [exp] 199 / 2e-61 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G043300 [exp] 395 / 8e-137 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.006G193900 [exp] 307 / 3e-101 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.016G059300 [exp] 295 / 1e-96 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.018G133000 [exp] 280 / 3e-92 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.001G010900 [exp] 275 / 1e-89 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.006G071500 [exp] 273 / 2e-89 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.008G108500 [exp] 265 / 5e-87 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.T171301 [exp] 265 / 5e-87 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.002G195800 [exp] 230 / 2e-72 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.001G278300 [exp] 199 / 6e-62 AT5G58600 525 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10030900 pacid=23155217 polypeptide=Lus10030900 locus=Lus10030900.g ID=Lus10030900.BGIv1.0 annot-version=v1.0 ATGATGTTTAATTGTTTGAGGTGTAATTTGCAGGACTACAACTGTACTGTGGATTTCGTTGGCTCCCCGTTCCTCGTTCGAGAATCATCCTTCTCTGGTG CGAACGGTACGTTAGAGACGTTAAGGTTGGACTTGATGGACAAGACAACTTCCATGTACGATGATGCTGATATACTAGTTTTCAACACTGGTCACTGGTG GACTCATGCGAAAACTTCTAAAGGAGAGGACTATTATCAGGAAGGTGATTATGTGCATAAAAGGCTCAAGGTACTTGAAGCATATAAGAGGGCACTTAGA ACATGGAGCAGATGGGTTGATCAGAGCATAGATACAAACAGAACCCTTGTCTTCTTCAGAGGCTATTCAGTGACTCATTTCAGAGGTGGCCGGTGGAACT CAGGAGGACAATGCCACAAAGAGACTGAACCGATCTTCAACGCAACTCACTTAGCTAAGTACCCTACGAAAATGAAAGTTTTGGAGAATGTGCTCCATGA GATGAAAACTCCAGTGATTTATCTGAACATAAGCAGACTCACGGATCACAGAAAAGACGGGCACCCGTCGATTTACAGAATGAAATACGATACGCCTGAA GAACTTGCTGCAGCCGAACGATCCCAAGATTGCAGTCACTGGTGCCTTCCGGGAGTGCCGGATACCTGGAATGAGCTTCTCTATGCCTCGATCTTGAAGT CTGGGATTGGATCAACCTAG
AA sequence Show only first row Show all	>Lus10030900 pacid=23155217 polypeptide=Lus10030900 locus=Lus10030900.g ID=Lus10030900.BGIv1.0 annot-version=v1.0 MMFNCLRCNLQDYNCTVDFVGSPFLVRESSFSGANGTLETLRLDLMDKTTSMYDDADILVFNTGHWWTHAKTSKGEDYYQEGDYVHKRLKVLEAYKRALR TWSRWVDQSIDTNRTLVFFRGYSVTHFRGGRWNSGGQCHKETEPIFNATHLAKYPTKMKVLENVLHEMKTPVIYLNISRLTDHRKDGHPSIYRMKYDTPE ELAAAERSQDCSHWCLPGVPDTWNELLYASILKSGIGST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030900 [exp]	0	1
AT4G02320			Plant invertase/pectin methyle...		Lus10008203 [exp]	2.6	0.9409
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030899 [exp]	2.8	0.9252
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10015210 [exp]	3.2	0.9224
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10035723 [exp]	6.5	0.9383
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10034836 [exp]	11.0	0.9244
AT3G44220			Late embryogenesis abundant (L...		Lus10043410 [exp]	11.4	0.9398
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001178 [exp]	14.3	0.9241
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10017851 [exp]	16.2	0.8768
AT5G47770		FPS1	farnesyl diphosphate synthase ...		Lus10006168 [exp]	17.5	0.9234
					Lus10038634 [exp]	21.6	0.9193

Compare expression of checked genes

Lus10030900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.