Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70520 800 / 0 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT1G70530 466 / 5e-157 CRK3 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) AT5G40380 457 / 1e-153 CRK42 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) AT1G19090 377 / 3e-123 CRK1, RKF2 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) AT4G21230 315 / 9e-99 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1) AT4G28670 312 / 5e-98 Protein kinase family protein with domain of unknown function (DUF26) (.1) AT4G23180 310 / 1e-96 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23230 301 / 5e-95 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G21410 303 / 8e-94 CRK29 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) AT1G61610 305 / 5e-93 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030589 [exp] 1157 / 0 AT1G70520 813 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10029123 [exp] 971 / 0 AT1G70520 822 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10013039 [exp] 858 / 0 AT1G70520 699 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10029122 [exp] 453 / 5e-152 AT1G70530 789 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10013040 [exp] 450 / 6e-151 AT1G70530 788 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10010960 [exp] 353 / 4e-114 AT1G70520 373 / 2e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10008764 [exp] 317 / 7e-103 AT5G40380 426 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Lus10018379 [exp] 317 / 3e-99 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10018382 [exp] 312 / 2e-97 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G043800 [exp] 889 / 0 AT1G70520 805 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.010G043700 [exp] 878 / 0 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.007G056000 [exp] 498 / 1e-169 AT4G28670 579 / 0.0 Protein kinase family protein with domain of unknown function (DUF26) (.1) Potri.010G043900 [exp] 478 / 3e-162 AT1G70530 805 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Potri.001G348000 [exp] 473 / 1e-159 AT5G40380 729 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.012G087000 [exp] 459 / 5e-154 AT5G40380 567 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.017G141400 [exp] 383 / 7e-125 AT5G40380 390 / 6e-127 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.001G276600 [exp] 380 / 4e-124 AT1G70520 373 / 8e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.017G141300 [exp] 375 / 5e-121 AT5G40380 382 / 4e-123 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.004G024632 [exp] 310 / 2e-100 AT4G23180 527 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10030901 pacid=23155423 polypeptide=Lus10030901 locus=Lus10030901.g ID=Lus10030901.BGIv1.0 annot-version=v1.0 ATGAGGAGCAAAACAGAGATCATCATAATCATCTTCTTCTTCCTAGCTGCAACGCTCCGGCAACAAACGGCAAGAGGAGACGCCAGAGCACAGACGGTCA ACGTTACCTGTAACAGTCAGCTGGAGGAGAACGGGACGATCTACGTGCCCAATTTCGTCGCGGCGATGGACAACATCAGCGACCAGATGCGAACCTCGGG GTTCGGAGCAGCGGTAGCAGGGGATCCAGGGCCTAACAGGAATTTTGGGCTGGCGCAATGCTACGGAGATCTGTCGTTGCTCGACTGCGTGCTCTGCTAT GCTGAGGCGCGCACCATCTTGCCGCAGTGCTACCCTTACAACGGAGGGAGGATCTTCCTCGACGGCTGCTTCATGAGGGCCGAGAACTACAGCTTCTACG GCGAGTACTCCGGCGCTCAAGACCAAGCCGTTTGTGGAGGCGGCGGAGGAAGGAATGCAACGGCAACATCGTTTCAGGATTCGGTGAGACGAGCTCTGTC GAATGTGGTGGCGAGTGCGCCGGGGAATGGAGGGTATTCCAGGACGAGGGAGGCGGTTTTCGGGGAAGGGAATAATGGTTCGTCGTCGTCGTTGGTTTTC GTGCTGGCGAATTGCTGGAGGAATTTGAATTCCAGTGCTTGCAGGTTGTGTTTGGAGAATGCTCAGGAGTCCTTGATTGGTTGCTTGCCTAGTACGGAAG GGAGAGCTTTGAATACAGGGTGTTTTGTTAGGTATTCTGATAGGGATTTTCTCAACAGCGAGTCTGGAAATCGAAGTTCTAGAGGTCCTAATGATGTGAG CAAGTTGGTGAAAATCTTGAACGACAGCAGCTTGAACTTCAAGTATTCGACGCTCGAGAAGGCTACAGGATCCTTCGACGAAGCAAACAAGCTTGGACAA GGAGGGTTCGGGTCGGTTTACAAGGGAGTTCTGCCGGATGGAAGAGAGATAGCTGTGAAGAGGCTGTTCATCAACAACAAGCACAGGGTAGCAGATTTCT TCAACGAAGTCAACATGATCAGCAGTGTGGAACATAAGAACCTTGTCAGGTTATTGGGTTGCAGCTGTTCCGGTCCCGAAAGCCTCCTTGTCTACGAATT CCTGCCCAACCGGAGTCTCGATCGGTACATCTTTGATGCAAACAAGGGGAAGACAATGAGCTGGGACAAGAGGTACGAGGTGGTTGTCGGAACAGCAGAA GGTTTAGTGTACCTTCATGAGAATTCCAGGATCAGGATCATCCACAGGGACATTAAGGCTAGTAACATTTTGCTGGATTCGAGGCTTCGAGCTAAGATTG CCGATTTTGGCTTGGCTAGGTCTTTCCAGGAGGATAAGAGTCATATAAGCACAGTCATTGCAGGAACCCTAGGGTATATGGCTCCGGAATATCTGGCACA CGGCCAGTTGACGGAGAAGGCAGATGTTTACAGTTTCGGAGTACTCGTGCTTGAAATTGTTACTGGGAAACAGAACAACAGAAGCAAATCCTCTGAATAT ACAGATAGCCTAGTCAACTTGATGTGGGTGCGATTCCACACGGGAAATCTCGAAGAGATGTACGATCCGAACCTGACGCTGCACAACCACCACAACTGCA ACGTCAGGAACGACGTTCTTCGAGTGGTCCACGTGGCGCTTCTGTGCACCCAGGAGAGTCCATCTCTAAGACCAGTCATGTCCAAGGTGCTGCAGATGCT AACCACTGAAGAGCAGCTGCCTCCTCCGACGAATCCTCCCTTCGCCGACGAGAAGACCATGGAAATGGGGGATAGAGATCCATTGGCCCTCAATGTTAGC CTTTCGGAATCAGTTGCTACTGTTGATCATAGTTCTTTCCATCCAAGATGA
AA sequence Show only first row Show all	>Lus10030901 pacid=23155423 polypeptide=Lus10030901 locus=Lus10030901.g ID=Lus10030901.BGIv1.0 annot-version=v1.0 MRSKTEIIIIIFFFLAATLRQQTARGDARAQTVNVTCNSQLEENGTIYVPNFVAAMDNISDQMRTSGFGAAVAGDPGPNRNFGLAQCYGDLSLLDCVLCY AEARTILPQCYPYNGGRIFLDGCFMRAENYSFYGEYSGAQDQAVCGGGGGRNATATSFQDSVRRALSNVVASAPGNGGYSRTREAVFGEGNNGSSSSLVF VLANCWRNLNSSACRLCLENAQESLIGCLPSTEGRALNTGCFVRYSDRDFLNSESGNRSSRGPNDVSKLVKILNDSSLNFKYSTLEKATGSFDEANKLGQ GGFGSVYKGVLPDGREIAVKRLFINNKHRVADFFNEVNMISSVEHKNLVRLLGCSCSGPESLLVYEFLPNRSLDRYIFDANKGKTMSWDKRYEVVVGTAE GLVYLHENSRIRIIHRDIKASNILLDSRLRAKIADFGLARSFQEDKSHISTVIAGTLGYMAPEYLAHGQLTEKADVYSFGVLVLEIVTGKQNNRSKSSEY TDSLVNLMWVRFHTGNLEEMYDPNLTLHNHHNCNVRNDVLRVVHVALLCTQESPSLRPVMSKVLQMLTTEEQLPPPTNPPFADEKTMEMGDRDPLALNVS LSESVATVDHSSFHPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030901 [exp]	0	1
AT4G18360			Aldolase-type TIM barrel famil...		Lus10038507 [exp]	2.2	0.9524
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	2.2	0.9636
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020360 [exp]	3.0	0.9543
AT5G09640		SNG2, SCPL19	SINAPOYLGLUCOSE ACCUMULATOR 2,...		Lus10007731 [exp]	3.2	0.9575
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	4.2	0.9523
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10022292 [exp]	5.3	0.9519
AT1G11905			B-cell receptor-associated pro...		Lus10020025 [exp]	5.3	0.9532
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10020288 [exp]	7.5	0.9441
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10016884 [exp]	8.1	0.9479
AT1G78100		AUF1	auxin up-regulated f-box prote...		Lus10041123 [exp]	8.2	0.9402

Compare expression of checked genes

Lus10030901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.