Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12940 647 / 0 ATNRT2.5 nitrate transporter2.5 (.1) AT1G08090 531 / 0 LIN1, ACH1, NRT2;1AT, ATNRT2:1 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) AT5G60770 526 / 0 ATNRT2.4 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) AT1G08100 523 / 0 NRT2;2AT, ACH2, ATNRT2.2 nitrate transporter 2.2 (.1) AT3G45060 518 / 0 ATNRT2.6 ARABIDOPSIS THALIANA HIGH AFFINITY NITRATE TRANSPORTER 2.6, high affinity nitrate transporter 2.6 (.1) AT5G60780 514 / 2e-179 ATNRT2.3 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.3, nitrate transporter 2.3 (.1) AT5G14570 420 / 6e-143 ATNRT2.7 high affinity nitrate transporter 2.7 (.1) AT4G14358 49 / 3e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030588 [exp] 831 / 0 AT1G12940 737 / 0.0 nitrate transporter2.5 (.1) Lus10013042 [exp] 610 / 0 AT1G12940 635 / 0.0 nitrate transporter2.5 (.1) Lus10026527 [exp] 495 / 9e-172 AT5G60770 759 / 0.0 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) Lus10016121 [exp] 392 / 7e-133 AT1G08090 583 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Lus10016120 [exp] 332 / 3e-110 AT1G08090 533 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Lus10008767 [exp] 321 / 6e-105 AT5G14570 483 / 1e-168 high affinity nitrate transporter 2.7 (.1) Lus10021444 [exp] 207 / 8e-63 AT5G60770 307 / 1e-101 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) Lus10025421 [exp] 174 / 1e-51 ND 193 / 1e-59 Lus10016119 [exp] 152 / 5e-44 AT5G60770 177 / 4e-54 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124708 [exp] 740 / 0 AT1G12940 684 / 0.0 nitrate transporter2.5 (.1) Potri.015G081300 [exp] 739 / 0 AT1G12940 698 / 0.0 nitrate transporter2.5 (.1) Potri.T124608 [exp] 735 / 0 AT1G12940 688 / 0.0 nitrate transporter2.5 (.1) Potri.012G087700 [exp] 682 / 0 AT1G12940 640 / 0.0 nitrate transporter2.5 (.1) Potri.009G008500 [exp] 539 / 0 AT1G08090 830 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Potri.009G008600 [exp] 538 / 0 AT1G08090 832 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Potri.001G348300 [exp] 491 / 4e-171 AT5G14570 509 / 1e-178 high affinity nitrate transporter 2.7 (.1) Potri.004G213716 [exp] 87 / 3e-21 AT1G08090 105 / 1e-28 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10030902 pacid=23155214 polypeptide=Lus10030902 locus=Lus10030902.g ID=Lus10030902.BGIv1.0 annot-version=v1.0 ATGGAAATGGAACCCAATTCAGCTTCGACGACGGCCAAATTTGCTCTGCCGGTCGACTCGGAGCACAAAGCCACCAAATTCGTAGTCTATTCATTTGCGG CTCCGCACATGAGAGCCTTCCATCTCTCGTGGGTGTCGTTCTTCGCGTGCTTTGTCTCCACATTTGCCGCCCCTCCTCTGCTTCCGATCATCCGCGACAA CCTCAACCTGACGGCCTCCGACATCGGAAATGCTGGCATTGCTTCTGTGTCCGGTGCTGTTTTCGCCCGTGTGATGATGGGAACCGCATGCGACATGTTC GGCCCTCGTCTTGCCTCAGCGGCGCTTACTTTGCTCACGGCTCCTGCTGTCTACTTCACCCCTATGGCATCGTCCCCTGCTTCCTTCCTCCTCGTCAGGT TCTTCACCGGTTTCTCTCTGGCGACATTCGTCTCGACCCAGTACTGGATGAGCTCGATGTTCTCCTCTCCAGTGGTCGGAACTTCCAATGGAGTCGCCGG CGGGTGGGGTAATCTTGGCGGAGGGGCAACCCAGCTCATAATGCCGCTCGTCTTCGGCCTAATCCGGGACATCGGAGCCACCAAATTCACCGCCTGGCGA ATCGCGTTCTTCATTCCCGCCTTGTTCCAAACCCTGTCCGCATTTGCCGTCCTGATATTCGGCCAGGACCTCCCAGACGGGAACTTCCGCCGCCTAGAAT CCTCTGGCGATAAGACCAAGGACAAGTTGGCCGACATCCTCCGCAACGGACTCACCAACTACAGAGGCTGGATCCTGGCCCTGACGTACGGGTACTGCTT CGGTGTCGAACTGACGATAGACAACGTGATCGCCGAGTACTTCTACGATCGGTTCAATTTGAAGCTCCACACGGCCGGGATTATCGCTGCAAGCTTCGGG TTGGCGAATTTAGTGTCGAGACCTGGCGGTGGGATTCTCTCCGATGTGGTGGCGAAGAGGTTTGGAATGAGAGGACGACTCTGGACGCTTTGGATTGTTC AGACTTTGGGTGGTGTTCTGTGTGTAGCCCTTGGCTTAGTTGATTCATTGACTGGCTCCATTGTTGTTATGATATGCTTCTCTTTCTTCTGCCAAGCTGC TTGTGGCCTCACTTTCGGCGTCGTTCCTTTCGTGTCCAGAAGGTCGTTAGGCTTGATCTCAGGGATGACAGGAGGAGGAGGCAACGTGGGAGCAGTGTTA ACCCAATTGATCTTCTTCAGAGGCTCAAGATACTCCAAGGAGAAAGGAATCATGCTGATGGGAGTTATGATCATATGCTGCAGTCTGCCAATAACTTTGA TACACTTCCCACAGTGGGGAGGGATGTTCCGTGGGCCGTCTTCGAGCAAAGTGGCGACAGAAGAGGATTACTATATGGCAGAATGGAGCTCGGAGGAGAA GCAGAGAGGGCTGCATCAGGCTAGCGTCAAGTTTGCTGACAACAGCAGGAGGGAGCGTGGTCGGAGATTGGGTTCCGGTACTGTGCCGACTGCTGGTAAT GGCTCGTCGTTGTCGCCTGAACTTGTAGCCTGA
AA sequence Show only first row Show all	>Lus10030902 pacid=23155214 polypeptide=Lus10030902 locus=Lus10030902.g ID=Lus10030902.BGIv1.0 annot-version=v1.0 MEMEPNSASTTAKFALPVDSEHKATKFVVYSFAAPHMRAFHLSWVSFFACFVSTFAAPPLLPIIRDNLNLTASDIGNAGIASVSGAVFARVMMGTACDMF GPRLASAALTLLTAPAVYFTPMASSPASFLLVRFFTGFSLATFVSTQYWMSSMFSSPVVGTSNGVAGGWGNLGGGATQLIMPLVFGLIRDIGATKFTAWR IAFFIPALFQTLSAFAVLIFGQDLPDGNFRRLESSGDKTKDKLADILRNGLTNYRGWILALTYGYCFGVELTIDNVIAEYFYDRFNLKLHTAGIIAASFG LANLVSRPGGGILSDVVAKRFGMRGRLWTLWIVQTLGGVLCVALGLVDSLTGSIVVMICFSFFCQAACGLTFGVVPFVSRRSLGLISGMTGGGGNVGAVL TQLIFFRGSRYSKEKGIMLMGVMIICCSLPITLIHFPQWGGMFRGPSSSKVATEEDYYMAEWSSEEKQRGLHQASVKFADNSRRERGRRLGSGTVPTAGN GSSLSPELVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12940		ATNRT2.5	nitrate transporter2.5 (.1)		Lus10030902 [exp]	0	1
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10010097 [exp]	6.8	0.7737
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10028297 [exp]	8.1	0.7501
AT1G20925			Auxin efflux carrier family pr...		Lus10030715 [exp]	10.7	0.7352
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040525 [exp]	13.2	0.7222
					Lus10010603 [exp]	14.0	0.7325
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Lus10030185 [exp]	16.5	0.7058
AT2G20800		NDB4	NAD(P)H dehydrogenase B4 (.1)		Lus10039768 [exp]	19.0	0.6912
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040526 [exp]	19.4	0.7143
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10032426 [exp]	21.0	0.6859
AT5G05340			Peroxidase superfamily protein...		Lus10009091 [exp]	23.0	0.6247

Compare expression of checked genes

Lus10030902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.