Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 770 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 714 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 709 / 0 EFR EF-TU receptor (.1) AT3G47110 700 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 692 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 449 / 2e-139 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G24130 424 / 3e-132 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 427 / 1e-130 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 417 / 3e-127 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT3G49670 406 / 4e-125 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011387 [exp] 1344 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 1325 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011388 [exp] 1313 / 0 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 1295 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 1283 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10016896 [exp] 1224 / 0 AT3G47570 714 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 1214 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 1203 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 1198 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102700 [exp] 982 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 961 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 939 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 934 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 927 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 894 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 892 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 890 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 887 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 881 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030903 pacid=23155277 polypeptide=Lus10030903 locus=Lus10030903.g ID=Lus10030903.BGIv1.0 annot-version=v1.0 ATGGGTTCATGGAGCTCGATCATGAGTGTACATACTCTGGTTGCTATACTTGTTCAGTTGCTATGCTTGTGTCGCCACCGGGCTTCCGCTTCCGGAATTC TGTTGAGTAACGAGACCGATCGTTTGGCTTTGCTCGAGTTCAAGTCCATGATTTCTACCGACCCTTTGGGGGCTTTGAGCTCGTGGAACGATTCTACCCA CTTCTGCCAGTGGTACGGCGTGTCTTGTTCCGAAAGACATGACGGTAGGGTCACCGTCTTAAGCTTGCCATCTCAAAACCTATACGGCTCTATCTCACCA TATGTCGGCAATCTCAGCTTCTTGAAAAGGTTGAGTCTTTATAACAACAGTTTCGGCGGGAGAATACCCCCTGAAATCGGCCGTCTTGGCAGATTGCAAC AGTTGGTGCTTTACAACAACTCGCTAAGTGGCGAGATCCCTCCCAACATCTCGGGATGCTCTGCTCTTCTCAAGCTTGATGTGTATAATAATAAACTTGT GGGAACACTACCGTGGCAGTTTGGCTTATTGAAGAGACTCCGACTCTGTTGGGTATCGTTAAACAACCTTCACGGAAGTATCCCTCCTGCTGTTGGCAAC TTATCTTCTCTCGAATTTTTTGTTGGTGCTCAAAACCAATTAAGCGGGAGAATTCCGGAAACTCTAGGCCAATTGAAGCACATTCAGTTTTTGGATGTGG CGGAAAATAATTTATCCGGTAAAATCCCTCCTTCCATTTTCAATCTTTCTTCTCTTAGAGAAATTTGGTTTGCATTTAACCAATTCCATGGAGATCTTCC CAGAGATACAGGAATATTGCTTCCTAATCTTCTTACTTTCAATGTGGATTCTAACCAGTTTACTGGTAGTGTTCCACCTTCCTTGTTCAATGCCTCCAAT TTGGTTCAGCTACAACTTCAGGTCAACAATTTTACAGGGAGCATGCCTAGTATGGCTGGCTCTAACAAGCTTATACGATGCGCGATCTTCCAAAACTCTC TTGGAAGCGGGAAGGTTGATGATTTGGACTTCCTCTCTTCTTTGACCAATGCCACTAGTTTGGAAAGTCTGGAGATTCAAGCCAATAATTTTGGAGGCAG CTTACCGCTGAATATTGGCAACCTGTCAAGCGATCTCAAGGATCTGAGATTCAACGACAACAACATATCGGGAAATATTCCAAGCGGAATGCAATACCTT GTCAACTTAGAATTGCTTTGGGGAAGTAACAATAATTTGGCAGGTACGATTCCATCCAACATTGGAAACCTCAAGTCTCTAAAGTCGTTGCAATTGCAGA ACAACAAACTTTCTGGGTTTATTCCGGTTTCTGTGGGAAATTTGACGAAATTGATTGAACTGGATATTAGCAATAACAGTTTACGTGGAGAAATTCCTAC TTCTATTCACAGTTGTGAGGGATTATTACGATTGAGTCTTCATAGCAACAATCTCAATGGTGTCATCCCCCCACAAATCTTCAGTCTTGCCTCCTTGTCA ACTGTCTTAGACTTGTCCCGCAATCAGTTCACAGGTGCCCTTCCCATCGAGGTGGGGAATCTAAAAAACTTGGGTATTTTAAATCTATCTTATAACATGT TGTCAGGCAGCATCCCAACTAGTTTGGGTAGCTGTATAAGTCTAGAGGCTCTATACTTGCAAGACAATCTCCTACAAGGAAAAATTCCTTCTTCTTTGAG TTCCCTGAGAGGTATTCAAGTGCTCGATTTTTCTGTCAATAATTTATCTGGTCAAATTCCAAAGTTTTTGGAGCTCATGAATATTTTACGACTTTTGAAT CTGTCGTATAACAATTTTGAAGATGAAGTGCCTACTCAAGGAGTATTCAAAAATATTACTATCATTTCAGTAGTCGGGAATAGCAAGCTTTGTGGGGGAA TTGCTCCACTTAAACTTCCATCATGTAACTTAACGAGACACTCAAGCAAGAGATTAAGTGTTAAGTGGAAGATTGTTATTTCAACAATTTCTAGTCTACT TTTTCTTACTTCCATTGGTTCTTGCTTATTCATCTCGTTCATTAAGAAAAGAGGAAGAGAAGAGCCGGTAGCAACAAATGATCCACAATTATTACAATTG TCTTACCAAATGCTCTACAAAGCTACGAATGGTTTTTCATCGACAAATCAGATTGGTATAGGCAGCTTTGGCTCGGTGTATAAGGGTGTCATTGATGAGA TTTATGAAATTGGTACCAATATTGCTGTGAAAGTATTCAACCTTCAGCGTCGTGGAGCTTCTAAGAGTTTTATGGCAGAATGTGAAACATTGAAGAACAT TAGACACAAAAATCTTGTGAGAATAATATCTGCATGTTCAAGCATTGATAATGAAGGAAATGATTTCAAGGCACTCATCTACGAATTTTTGGCTAATGGA AGTTTAGAAGACTGGCTCCATTGGCCGATTGAAAAAGTAAATGAGCCTACAACAAGGAGTTTAAACTTCATTCAGAGGATAAACATTGTCATTGATATAG CTTTCGCAGTGGATTATCTTCACAACCATTGCGAAATTTCAATTGTTCATTGTGATCTCAAGCCAAGCAATGTCCTTCTTGATGAGAATATGGTGGCTCA TGTTGGTGATTTTGGATTGGCAAAATTTCTTACAATGGTTGAAAATCCATCTTCAACTACAATCGGTATAAAAGGAACAATTGGCTATGCACCTCCAGAA TATGGAACGGGAAATGAAATTTCAATGCAAGGCGATGTCTATAGTTATGGTATCCTTCTGCTTGAGTTATTTACTGGAAGGAGACCAACCGATGAAACTT TTAAAGACGGTTTAAGCCTTCATAAGTTCGTTAGGAGCGCTTTGTCAAAACAATGTTCATCTGAAGTTGTGGATCCAATTCTACTCAATGAACTACTTCA TTACTTAATAATCCATCGCAGCCACACCACCGACAGTTTAGAGAAAGCAAGAAAAGCCCTAGAGGAACTTATGAGTTCCATTCTAGAAATCGGCATCGCT TGTTCTTCGGATATCCCAGAAGAGAGAGTTGGCATGGGCGAAGTTTTATCAAGGCTTATCTCTATAAAAGAAGGCTCCTTTTGGGTTCGAAAGAAGGAGG TAACTGCAATGTGA
AA sequence Show only first row Show all	>Lus10030903 pacid=23155277 polypeptide=Lus10030903 locus=Lus10030903.g ID=Lus10030903.BGIv1.0 annot-version=v1.0 MGSWSSIMSVHTLVAILVQLLCLCRHRASASGILLSNETDRLALLEFKSMISTDPLGALSSWNDSTHFCQWYGVSCSERHDGRVTVLSLPSQNLYGSISP YVGNLSFLKRLSLYNNSFGGRIPPEIGRLGRLQQLVLYNNSLSGEIPPNISGCSALLKLDVYNNKLVGTLPWQFGLLKRLRLCWVSLNNLHGSIPPAVGN LSSLEFFVGAQNQLSGRIPETLGQLKHIQFLDVAENNLSGKIPPSIFNLSSLREIWFAFNQFHGDLPRDTGILLPNLLTFNVDSNQFTGSVPPSLFNASN LVQLQLQVNNFTGSMPSMAGSNKLIRCAIFQNSLGSGKVDDLDFLSSLTNATSLESLEIQANNFGGSLPLNIGNLSSDLKDLRFNDNNISGNIPSGMQYL VNLELLWGSNNNLAGTIPSNIGNLKSLKSLQLQNNKLSGFIPVSVGNLTKLIELDISNNSLRGEIPTSIHSCEGLLRLSLHSNNLNGVIPPQIFSLASLS TVLDLSRNQFTGALPIEVGNLKNLGILNLSYNMLSGSIPTSLGSCISLEALYLQDNLLQGKIPSSLSSLRGIQVLDFSVNNLSGQIPKFLELMNILRLLN LSYNNFEDEVPTQGVFKNITIISVVGNSKLCGGIAPLKLPSCNLTRHSSKRLSVKWKIVISTISSLLFLTSIGSCLFISFIKKRGREEPVATNDPQLLQL SYQMLYKATNGFSSTNQIGIGSFGSVYKGVIDEIYEIGTNIAVKVFNLQRRGASKSFMAECETLKNIRHKNLVRIISACSSIDNEGNDFKALIYEFLANG SLEDWLHWPIEKVNEPTTRSLNFIQRINIVIDIAFAVDYLHNHCEISIVHCDLKPSNVLLDENMVAHVGDFGLAKFLTMVENPSSTTIGIKGTIGYAPPE YGTGNEISMQGDVYSYGILLLELFTGRRPTDETFKDGLSLHKFVRSALSKQCSSEVVDPILLNELLHYLIIHRSHTTDSLEKARKALEELMSSILEIGIA CSSDIPEERVGMGEVLSRLISIKEGSFWVRKKEVTAM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10030903 [exp]	0	1
					Lus10022098 [exp]	2.4	0.9207
AT3G14740			RING/FYVE/PHD zinc finger supe...		Lus10042494 [exp]	4.6	0.8949
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10035196 [exp]	5.5	0.9127
					Lus10016424 [exp]	6.9	0.9005
AT3G47570			Leucine-rich repeat protein ki...		Lus10031043 [exp]	8.7	0.8669
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10016104 [exp]	9.9	0.8867
AT5G37450			Leucine-rich repeat protein ki...		Lus10002278 [exp]	9.9	0.9093
AT2G19330		PIRL6	plant intracellular ras group-...		Lus10003229 [exp]	10.4	0.8916
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10003449 [exp]	10.8	0.9015
AT3G01190			Peroxidase superfamily protein...		Lus10007638 [exp]	10.8	0.8534

Compare expression of checked genes

Lus10030903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.