Plant FIBer expression Database

Lus10030904 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10740 732 / 0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
AT1G23330 718 / 0 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030585
[exp]
915 / 0 AT1G10740 766 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Lus10013048
[exp]
822 / 0 AT1G10740 779 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Lus10029114
[exp]
819 / 0 AT1G10740 778 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Lus10030586
[exp]
411 / 4e-144 AT1G10740 356 / 1e-123 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G044400
[exp]
751 / 0 AT1G10740 719 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Potri.008G187900
[exp]
739 / 0 AT1G10740 709 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Potri.016G114350
[exp]
214 / 1e-68 AT1G10740 203 / 1e-65 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
Potri.004G029200
[exp]
200 / 1e-62 AT1G10740 188 / 2e-59 alpha/beta-Hydrolases superfamily protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Lus10030904 pacid=23155183 polypeptide=Lus10030904 locus=Lus10030904.g ID=Lus10030904.BGIv1.0 annot-version=v1.0
ATGCCGAGGCGTTGGGCGTCGGCGGCGCTTCAATTGACGGAGCTCTTCGTCAGCGCTTTGGTCCACATGCTATACGGATTCTACATATTCAGCTCCGCCG
TCGCCGGCGATCTCTCCCAAACCTTGAGCGATTGGTTCTTCAAACCCAACATGAATCTCCTCGTCAAAGAACAATCATTAAACGATTTATCATCCTCCAA
GCTCACCAACGTCGAGGACCTCCCTCCGATCGTCTTGGTCCACGGCATTTTCGGATTCGGGAAAGGGCGATTGGGGGGTTTATCGTACTTTGCAGGTGCA
GAGAATAAAGATGAGAGGGTTCTTGTTCCTGATTTGGGATCTCTCACTAGCATCTACGATAGGGCGAGGGAGCTGTTCTATTATTTGAAAGGTGGCCAGG
TTGATTATGGTGAAAAACACAGCAAAGCTTGTGGGCATTCCCAGTTTGGAAGGATATATGAAAAAGGGAACTATCCTGAGTGGGATGAAGATCACCCTAT
TCATTTCGTTGGCCATTCTGCCGGAGCTCAGGTTGTTCGAGTTCTGCAGCAAATGCTTGCTGACAAGTCCTTCAAGGGTTATGAGAACACTTCAGAGAAT
TGGGTGTTGAGCATTACATCCTTATCAGGTGCTTTCAATGGAACTACCAGAACTTACTTGGATGGAATGCTTCCGGAAGAGGGGAAGGGCTTGAAACCGA
TATCTCTGCTGCAAATCTGCCGTCTAGGCGTGATTGTCTACGATTGGCTAGACATACCATGGCTGAAAGCTTACTACAACTTTGGGTTCGACCACTTCAA
CATGTCCTGGAAGAAAATGGGGATCTCCGGTCTGGTGAATTGCCTATTGGGAAATGCCGGTCCATTTGCTCATTCAGGAGACTGGATCCTCCCCGACCTA
ACGATCCAAGGCTCAGTGGAACTCAACCGTCATCTACAAACGTTCCCCAACACGTACTACTTCAGCTACGCAACCAAGCGAACCGCGAAGATCTTTGGTG
GTGTCACGTTGCCTTCGAGTATCTTCGGTATCCATCCCATGCTTTTTGTCAGAGTTCTTCAGATGAGCCAGTGGAAACTCCCTTCCGATGTTCCTCCTCC
TTACAAAGGATACCGGGATGAGGATTGGCAGGACAACGACGGTGCTCTCAACACCATATCTATGACACACCCTCGCTTCCCAGTCGAGCATCCGAGCCAC
TTCATTCAAGACGACTCCCAATGTCGATCCTTGCAGCCCGGGATATGGTACTACAAGGTGGTGGAAGGAGATCACATACTGTTCATAGTCAACAGAGAAA
GAGCAGGGGTGCAATTCGACTTGATATACGACAGCATTTTCGAACGATGCAGAAAGCATGTGTTCAAGAGGAACCCACAGATGTTGCCAAATGAAGCACA
CCATTAA
AA sequence
>Lus10030904 pacid=23155183 polypeptide=Lus10030904 locus=Lus10030904.g ID=Lus10030904.BGIv1.0 annot-version=v1.0
MPRRWASAALQLTELFVSALVHMLYGFYIFSSAVAGDLSQTLSDWFFKPNMNLLVKEQSLNDLSSSKLTNVEDLPPIVLVHGIFGFGKGRLGGLSYFAGA
ENKDERVLVPDLGSLTSIYDRARELFYYLKGGQVDYGEKHSKACGHSQFGRIYEKGNYPEWDEDHPIHFVGHSAGAQVVRVLQQMLADKSFKGYENTSEN
WVLSITSLSGAFNGTTRTYLDGMLPEEGKGLKPISLLQICRLGVIVYDWLDIPWLKAYYNFGFDHFNMSWKKMGISGLVNCLLGNAGPFAHSGDWILPDL
TIQGSVELNRHLQTFPNTYYFSYATKRTAKIFGGVTLPSSIFGIHPMLFVRVLQMSQWKLPSDVPPPYKGYRDEDWQDNDGALNTISMTHPRFPVEHPSH
FIQDDSQCRSLQPGIWYYKVVEGDHILFIVNRERAGVQFDLIYDSIFERCRKHVFKRNPQMLPNEAHH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G10740 alpha/beta-Hydrolases superfam... Lus10030904
[exp]
0 1
Lus10030905
[exp]
1.0 0.9746
AT1G09570 FHY2, HY8, FRE1... ELONGATED HYPOCOTYL 8, FAR RED... Lus10007594
[exp]
2.8 0.9445
AT5G47060 Protein of unknown function (D... Lus10043343
[exp]
5.0 0.9206
AT5G14360 Ubiquitin-like superfamily pro... Lus10014884
[exp]
5.7 0.9135
AT4G09960 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-... Lus10009481
[exp]
5.9 0.9198
AT4G14550 AUX_IAA SLR, IAA14 SOLITARY ROOT, indole-3-acetic... Lus10039414
[exp]
6.5 0.8939
AT2G28260 ATCNGC15 cyclic nucleotide-gated channe... Lus10016097
[exp]
6.7 0.9090
AT5G53980 HD ATHB52 homeobox protein 52 (.1) Lus10003492
[exp]
7.7 0.9018
AT2G38750 ANNAT4 annexin 4 (.1) Lus10024171
[exp]
8.1 0.9201
AT1G60783 unknown protein Lus10006204
[exp]
8.9 0.8567

Lus10030904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.