Plant FIBer expression Database

Lus10030905 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011549
[exp]
251 / 6e-75 AT5G67620 90 / 1e-20 unknown protein
Lus10017218
[exp]
144 / 8e-38 AT4G14103 45 / 5e-05 F-box/RNI-like superfamily protein (.1.2)
Lus10019266
[exp]
99 / 1e-22 ND /
Lus10030519
[exp]
94 / 7e-22 ND /
Lus10037289
[exp]
86 / 2e-17 AT5G02920 61 / 4e-10 F-box/RNI-like superfamily protein (.1)
Lus10039271
[exp]
67 / 1e-11 AT5G56820 88 / 5e-19 F-box/RNI-like/FBD-like domains-containing protein (.1)
Lus10042272
[exp]
66 / 2e-11 AT4G03220 65 / 4e-11 Protein with RNI-like/FBD-like domains (.1)
Lus10027507
[exp]
67 / 3e-11 AT1G01580 475 / 1e-152 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1)
Lus10003696
[exp]
64 / 3e-11 AT3G51530 52 / 1e-07 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G146500
[exp]
47 / 3e-05 AT5G02920 64 / 2e-11 F-box/RNI-like superfamily protein (.1)
Potri.017G146300
[exp]
44 / 0.0002 AT5G02700 71 / 8e-13 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10030905 pacid=23155369 polypeptide=Lus10030905 locus=Lus10030905.g ID=Lus10030905.BGIv1.0 annot-version=v1.0
ATGACAGGGGACCGATTATCAAAGCTTCCGGCTGAGATCATCCACGACATCCTCCGCCGTCTAGACTCCCCCGATGAAGCGGCGAGAACTTGCGTCCTGT
CGAGAATATGGTACCGTCAAATCTGGCGGTCTTACCCTGTCGTAGAGTATCGCGAAGAAGAAGAACAAATTTCCTCTGACTCCAGGTTAGCAAGCTTCAC
ATCATCGTCTTGCACACGGATGTCCACATTTTTCGTCCCGAATCGAATACCTTTATCCGCGTTGAGGATCTCGCTGCTAGAGGCGCCCGACGAAGAACGT
CACAGCCAGCTGGAGAGGTTACTGGAATCCTCTTCGTCATTGGCTGCAATTTGTGGCTCGCCTATCGAGATCTCTGTTGAGATTCTTAATGGCTATTACT
ACAGTATTAGTTCGTTTGAAAAGCTGCTCCGGAATTGCGGCCGCACTCGAATCCTGAAGCTCAGACGCTGTCTGGTATACCCATATTTTGGCAGCTCCGT
CTGGGCTGATCATCTTCCTAATCTCGAATCACTGAGTTCGCTATACACAAATCTTTATAGTTTGGAAGGTTCGATTACAATCGGTCGATTTAAGAACTGC
AACTTGAAATCTCTGGAAATTGAGATCTTTTTTGTCGACTTTAATGAAATAATCCAGATTACTAGTGCGCCGCTGTTAGAGAGACTGGCACTAAGGCTTC
ATTATTATAAGCTGATCAAGATTAAGCTATCTTCATCATCCGCAGCTCCCAATCTCAAAATCGTTATGATTTCGAATCACCAGGAGGTGAAGCAAGAGGA
CATTGATGCCCTGACTTTCAATCTGCCATCTCTTCAGTCTCTTTCTTTCGAGAAATCGAAATTCCTAGGTGGAAAGTGCTGGCTAAGGGTTCCTTCTAAT
TCCAAGCTTACCAAGTTCGGTTTAACAAATTGCCCCCAGTACTTTTTGGACGAGCCGTTGCAGGAGATTAAAATCGACGCTCCTAATCTTTCTGCTTTCT
TCTACATAAATCAAACTTCTCTGCTTACGCTGATTCGCCATGTTAATACCGTCAGCGTGGCTTCTGATTTTCAGTTTGCAGTTGCTGTAAGTACAGCCGC
TTACTATTCCCCTGGCCAATTCTTTGTTAGATTGAATGAGTTGCTGGCGCCATTGTTGAGAAGCCAACAGCTCCATAACGTGGTCTTGAAATTGCAAGGG
CTCGAGCATTTCTCGTCTTCCGAGTTTAAAAAGTATGTGATGAGGAATCGAGAATTGATGGTCGTAAAACATTTGCAATTAGAGGTGCGGTCCTGGACCG
ATTCTAGCTGGTATCTTTTCGATTATTGTTTTTCGATATGCCGTCCTAAGTTTGTCACGATTTTTCAAACTGGTCCGATAAATTTGACTGGAAGAACACA
ATTTCTCGAGTATATTTGCAAGCAGCCGGACCGGAACTCTCTGAATAAGTGTTGGCGGCATCAATTGAAAGATGCCAAGATCATAGAAAACAGTGGATGC
GAGACGATGGGAATCCATGAAGCGTTTGATTCGTCACTAAGTGCCGAAGACAATCTATTTTCTAGTACTTTTATATTAACGTGGCACGATGGCGATGATA
GCTCCATACATGGCAATGATAGCTCCATACATGGCGATGATAGCTCCGTACCTGTTGTCATTCTTTGTTGTTGCGGTTTGTTCCTAATTCTATTAGGGTT
TTTTGTGTTACTAGTTATGTTGGCCGCGTGA
AA sequence
>Lus10030905 pacid=23155369 polypeptide=Lus10030905 locus=Lus10030905.g ID=Lus10030905.BGIv1.0 annot-version=v1.0
MTGDRLSKLPAEIIHDILRRLDSPDEAARTCVLSRIWYRQIWRSYPVVEYREEEEQISSDSRLASFTSSSCTRMSTFFVPNRIPLSALRISLLEAPDEER
HSQLERLLESSSSLAAICGSPIEISVEILNGYYYSISSFEKLLRNCGRTRILKLRRCLVYPYFGSSVWADHLPNLESLSSLYTNLYSLEGSITIGRFKNC
NLKSLEIEIFFVDFNEIIQITSAPLLERLALRLHYYKLIKIKLSSSSAAPNLKIVMISNHQEVKQEDIDALTFNLPSLQSLSFEKSKFLGGKCWLRVPSN
SKLTKFGLTNCPQYFLDEPLQEIKIDAPNLSAFFYINQTSLLTLIRHVNTVSVASDFQFAVAVSTAAYYSPGQFFVRLNELLAPLLRSQQLHNVVLKLQG
LEHFSSSEFKKYVMRNRELMVVKHLQLEVRSWTDSSWYLFDYCFSICRPKFVTIFQTGPINLTGRTQFLEYICKQPDRNSLNKCWRHQLKDAKIIENSGC
ETMGIHEAFDSSLSAEDNLFSSTFILTWHDGDDSSIHGNDSSIHGDDSSVPVVILCCCGLFLILLGFFVLLVMLAA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10030905
[exp]
0 1
AT1G10740 alpha/beta-Hydrolases superfam... Lus10030904
[exp]
1.0 0.9746
AT5G14360 Ubiquitin-like superfamily pro... Lus10014884
[exp]
2.6 0.9222
AT4G09960 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-... Lus10009481
[exp]
4.2 0.9277
AT2G38750 ANNAT4 annexin 4 (.1) Lus10024171
[exp]
5.9 0.9298
AT1G70580 GGT2, AOAT2 GLUTAMATE:GLYOXYLATE AMINOTRAN... Lus10006203
[exp]
6.3 0.9403
AT1G09570 FHY2, HY8, FRE1... ELONGATED HYPOCOTYL 8, FAR RED... Lus10007594
[exp]
6.3 0.9299
AT1G73830 bHLH bHLH050, BEE3 BR enhanced expression 3 (.1.2... Lus10038939
[exp]
8.5 0.8904
Lus10020564
[exp]
9.0 0.9336
AT5G53980 HD ATHB52 homeobox protein 52 (.1) Lus10003492
[exp]
9.5 0.8945
AT1G14700 PAP3, ATPAP3 purple acid phosphatase 3 (.1.... Lus10034429
[exp]
10.5 0.9022

Lus10030905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.