Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37240 64 / 3e-11 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030582 [exp] 842 / 0 AT2G37240 64 / 3e-11 Thioredoxin superfamily protein (.1) Lus10029111 [exp] 653 / 0 AT2G37240 61 / 2e-10 Thioredoxin superfamily protein (.1) Lus10013051 [exp] 621 / 0 AT2G37240 60 / 4e-10 Thioredoxin superfamily protein (.1) Lus10014017 [exp] 72 / 4e-14 AT2G37240 316 / 1e-109 Thioredoxin superfamily protein (.1) Lus10019900 [exp] 63 / 3e-11 AT2G37240 214 / 7e-70 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G113000 [exp] 607 / 0 AT2G37240 62 / 1e-10 Thioredoxin superfamily protein (.1) Potri.010G136300 [exp] 598 / 0 AT2G37240 62 / 8e-11 Thioredoxin superfamily protein (.1) Potri.006G133100 [exp] 68 / 9e-13 AT2G37240 325 / 6e-113 Thioredoxin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030907 pacid=23155265 polypeptide=Lus10030907 locus=Lus10030907.g ID=Lus10030907.BGIv1.0 annot-version=v1.0 ATGGCTTCTTTCTCGATGAAGGATTTCGTAGGCAACGGCGTTCTGAAGCAGCTGCTGCCAAAACTGCTGGAAGAAGGGTGGGACGATGTGCTGACTTTGA AGATCATGAACTCTGAGGACATGGATGCTATGAACCTCACCAGGCGACAAAAGGATGCTCTCGAAATAAGAACATACCTACACGATCGGGCCCTGATGAG CTACGGAGACAAACTCGAGGCCTCGGGGAAAGGTCTACTGGAGCTTATTGCGATGGGAAATGAGCTAGCATCGCAGTTCGCGATGAAAAGAGGCCACATA GCTCGTTTCCTGGACAAAACCAATGCTTGCACAGAACCTCCAAGCAAGTCAGAAGCCAATTTCCCCATCAGGAAACCTCAAGCTCCGTCCAGAAATGAGA GTCTCGTGCAGAGTTTCGCATCTGTTACCTCGAGAAAGATGCCGGCCATGTCGAGGTACCCAGCTACAGGAAACAATTACAACACATCGTTCTACGACAA ATCCTTCGAGCAGTCGGTAGCGGATTTCAAGATCAAAGATGGTTATGTGTTCAAAGGGGTGGTTGCTTCGGGGCCGGCTGAGCCAAGAGCGTGTGGGTGT ATAGCTGCTCCTACAGTGGTTGAACAGGTTGCTCCCTATTCAGCCATTGAGAACATCACGGTTCAGAAACTGACTCCTGAGTATAAGATCGGGATGGGGC GGTTGTTGAAGACCAAAGCGCCTCCGATGAAGGTTTCAGAACTGTGGCGTGACAGACCGGCTATATTCCTCTGTGTCAGACGCCCCGGATGCATAATGTG TAGAGCTGAAGCACATCAACTCTACGCAAGAAAACCGATTTTCGACTCGATGGGAATCCAGCTATTTGCAGTTCTACTAGAGCACATCGAGTCAGAGGTA CAAGAATTCTGGCCACGGTACTGGGGAGGAATGGTGCTCTATGATCAGAGTATGGATTTCTTCAAAGCTCTCGGTGGTGGAAGCCTGCTGAAGGACAAGT TCATATCAGGATTTCTGTTCAATCCTCGCGCGATTTCGAACTACAAACGAGCGAGAGCCATGGGGCTGGAACAGAACTTCACTGGTGAAGGTGAGATCAA AGGTGGACTTCTGGTTGTAGGAAGGAAAAGGGCAGGCATTGCTTACCAGTTTGTCGAGAGGAACTTCGGCGATTGGGCTCCAATAGCTGAAGTAATTGGT ATCTGTAACCAGTTACAGAACCAGCAGCAAGATCGAGGCGATCAGTCGATGATGCTATCTATACAGGAGTATGAGTGA
AA sequence Show only first row Show all	>Lus10030907 pacid=23155265 polypeptide=Lus10030907 locus=Lus10030907.g ID=Lus10030907.BGIv1.0 annot-version=v1.0 MASFSMKDFVGNGVLKQLLPKLLEEGWDDVLTLKIMNSEDMDAMNLTRRQKDALEIRTYLHDRALMSYGDKLEASGKGLLELIAMGNELASQFAMKRGHI ARFLDKTNACTEPPSKSEANFPIRKPQAPSRNESLVQSFASVTSRKMPAMSRYPATGNNYNTSFYDKSFEQSVADFKIKDGYVFKGVVASGPAEPRACGC IAAPTVVEQVAPYSAIENITVQKLTPEYKIGMGRLLKTKAPPMKVSELWRDRPAIFLCVRRPGCIMCRAEAHQLYARKPIFDSMGIQLFAVLLEHIESEV QEFWPRYWGGMVLYDQSMDFFKALGGGSLLKDKFISGFLFNPRAISNYKRARAMGLEQNFTGEGEIKGGLLVVGRKRAGIAYQFVERNFGDWAPIAEVIG ICNQLQNQQQDRGDQSMMLSIQEYE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37240			Thioredoxin superfamily protei...		Lus10030907 [exp]	0	1
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10022020 [exp]	1.4	0.9648
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10005762 [exp]	2.6	0.9710
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Lus10007139 [exp]	3.0	0.9259
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10006360 [exp]	4.9	0.9516
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10004633 [exp]	5.5	0.9250
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10013728 [exp]	6.3	0.9366
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10012854 [exp]	7.1	0.9366
AT3G52780		ATPAP20, PAP20	Purple acid phosphatases super...		Lus10017056 [exp]	7.1	0.8953
					Lus10026928 [exp]	7.7	0.9366
AT2G46150			Late embryogenesis abundant (L...		Lus10027177 [exp]	8.4	0.9366

Compare expression of checked genes

Lus10030907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.