Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68930 926 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G22070 621 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 551 / 3e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 538 / 6e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G25360 534 / 2e-173 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 530 / 5e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 508 / 1e-164 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G16860 508 / 8e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 494 / 8e-159 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49710 490 / 9e-158 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030581 [exp] 2342 / 0 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10016425 [exp] 634 / 0 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10013052 [exp] 540 / 7e-180 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10029110 [exp] 528 / 4e-175 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10022629 [exp] 520 / 1e-169 AT2G41080 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013540 [exp] 522 / 3e-169 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 520 / 4e-167 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035164 [exp] 518 / 5e-167 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012971 [exp] 512 / 3e-166 AT1G68930 487 / 5e-163 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G136200 [exp] 1157 / 0 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G085500 [exp] 614 / 0 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G027800 [exp] 559 / 0 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 555 / 0 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G048800 [exp] 553 / 0 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 533 / 2e-174 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G075000 [exp] 530 / 1e-173 AT2G41080 755 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136100 [exp] 523 / 1e-172 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.014G012500 [exp] 528 / 3e-172 AT3G49710 995 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 530 / 3e-171 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10030908 pacid=23155290 polypeptide=Lus10030908 locus=Lus10030908.g ID=Lus10030908.BGIv1.0 annot-version=v1.0 ATGGAGATGGAAATTAGTGAGAAGGATAAGCTTGAGCTGGAAAAGAGGGATAATGTTGATAACCCTATGAACTATCAATCATCTGGTGGTGGTTTATCTT CAGACTGGCGTTTCGGTGGTGGTGCTAATGTAGCGAATTCGGCTCTAGGTGGTGCAGCTTCTTGCTCATCTGCTGCTATGGGAGAAGAATCATTTGGTGG TCCTGCTGGTATCTGGGATCACCAGGCTAGTTCACAAAACATAGGGTTTTGTGACTTGATCAATGCCCCAGGAACCCCATTAGGCATGGTAAAAGGCGGG GGAGCCCTCGGTATGGGTTGGAATCCACATAGCTCAATGTCGAGGGAGAGTGGCATTTTCTTGCCGAATCCCCATGGAATACTGCCCCCGAGCTTATCCC CATTTCCAGCTGATCCTGCTTTCATTGAGAGAGCTTCAAGGTTTTCGTGCTTCAGCGGTGGTGGCCAGTTTAGCGACATGGCTCATCCGTTTGCAATGTC TGAAGCTATGGGTCTTTACTCCAGAGGAGGCGGCATGATTCCAGTACCACCACAGGAGGTATTTGCAGGCATAGGGTCGAAATCGTTATCAGGTCAGAGA AACATGATGATGAATCCAGGAGAATGTTCTACAGAGGTAACAGATGCTTCTTTGCGTATGGATCATCATGCCAAAACTGAAGAAAGCCCACTTAAGAGCG AGAGAAGAAGCGAAAGTGTTGTCAGATCTCAGGATGAAGTAAAACCAGGCGTGGTTAGATCCGGTAATGACTCCGATGAAGCTGAATTTAGTGGTGGTGG TGGTCAAGACGACGCTACTATGTTGGAGGGAAATGGTGGGAAATTGTCACTTAAGGGCCTCGACTCAAGGAAAAGGAAAAGGAATGGACAGGACACTGAG CATGATGCAGGGAAAGGAAGCCAGCAATCTGGCGAAAGTACGAAGGATGGCTCGGAAATACACCAGAAGGGAGGTAAGAATCCGAGTCCGGCAGCTAACA AGGCATCTGGGAAAAATGGCAAACAAGGAGGATCTCAAGTATCTGATCCAGCAAAAGAAGAATATATTCATATCAGAGCTCGAAGAGGACAAGCAACTAA TAGCCATAGTCTTGCAGAGAGAGTAAGAAGAGAGAAGATCAGTGAAAGAATGAAGTATCTGCAGGACCTCGTTCCCGGATGTAACAAGGTCACAGGCAAG GCAGTAATGCTGGATGAAATTATCAATTACGTGCAATCGTTGCAACGGCAAGTGGAGTTTTTGTCAATGAAGCTCGCAACAGTTAATCCACGGATGGATT TTAACAGCCTTGAAGGGCTCTTAACAAAAGATATCCTATCATCAAGAGCTATTCCTTCAGCTAATCTGCCATTTTCGCCAGAAATGCCTATGCCTTATCC CCCATTACACCCATCTCAATCCGGACTCATCCCAACAGGTTTTCCTGCTATGGCGAACCATTCCGACATCCTCCGACGAACTATTGGCTCTCAGTTAGCT TCTTCAAGTGGAGAATTCAAGGATCCTGCTCAGCAGCTACCGAGTTCATGGAACGAGGAGCTACACAATGTAATCCAGATGTATGGAGCTGCCGGGCCTC AAGATAGCCAAGAGATAGCTGGTACAAAACTGTTCCTCCAACTTGTCTACTGCGAAACCCGGAACCAGTCCCAAGTCAAGAAGCTCCACTGCCACATTCT CAGGACTCTGCTCAATCCGGAACCATTCCTCTCCAACAATCTAATCAACGCCTATGGCCAACTACGAAATCCATCCTATGCACGCAACGTGTTCGACGAA ATGCCCCAACGAACCCCTTTCTCCTGGAACACCCTCCTCTCTGCTTACTCCAAGTCCGGAGACCTCTCTCAAATGCAAGAAATCTTCAACCTCATGCCGA TTACAGATGGGGTGTCCTGGAATTCGCTTATTTCCGGGTATGCGAATCATGGCTCGGTTGATGAAGCTGTTAAGGCTTACGGCATGATGCTGAGGAATGG AGCAGGTAATGTGAATCGGATTACTTTTTCGACGATGCTTATATTGTGTTCGAGCCGAGAGCGCATTGAATTGGGTAGGGCGATTCACGGGCAGATAGTC AGACTTGGGTTTAGAGATTATGTATTTGTTGGCAGTGCTTTGGTGGATATGTATTGTAAGATAGGATCAGTTCATGAGGCAGTGCGATCATTTGATGAGA TTCGGGAAAGGAACGTTGTCATGTATAATACATTGATCACGGGACTTTTACGGAATGGTATGGTGGAGGATGCCAAGAGAATCTTTCGTAGTATGAAGGA TAGAGATTCGATTACTTGGACGACAATGATCACTGGCTTTGTACAGAACGGATTAGATAGAGATGCTCTTGATTTGTTTCGCGAGATGAGAGTAGCTGAG ATGGAAATCGATCAATTTACTTTCGGTAGCGTGCTGACTGCTTGTGGAGGGATCAAGGCTCTACATGAAGGGAAGCAAGTTCATGCCTTTATCGTGAGGA AGGAATTTAAAGGTAACGTCTTTGTGGACAGTGCTCTCCTGGATATGTATTGTAAAAGTAAGAATGTAAGCTATGCCGAAGCAGTTTTTCGACGAATGAA GGTTAGGAACGTTGTGTCGTGGACAGCAATGCTGGTTGGGTATGGCCAGAATGGGTTCAGCGAGCAAGCTATTAGGATCTACTCGGAAATGCAGCGGAAT GGGATTAAGCCTGAAGATTTCACTCTCGGTAGTGTGATAAGTTCATGTGCTAATTTAGCTAGCTTGGAAGAAGGTACTCAATTCCATGCTCGAGCGTTAA TGTCAGGCTTGATTTCTTCTATTACAGTATCCAATGCACTCATTACTCTGTACGGTAAATGTGGAAGCGTGGAGGAATGTGATCGGCTGTTCCACGAGAT GAAGTTCCGAGACGAAGTTTCGTGGACCGCCATGGTTTCAGGATATGCACAGTTTGGCAAAGCTGAAAAGACGATCGAATTGTTTGAGGAGATGTTGAGA CAAGGGTTGAAACCCGATTCGGTTGCGTTCATAGGGGTGCTTTCGGCTTGTAGTAGAGCAGGGCTAGTAGAAAGGGGGAACTGGTATTTCGAATCAATGT CAAGAGACCATGGCATAAATCCTAGCTGTGATCACTACACTTGCATGATCGACCTTTTGAGTCGAGCCGGAAGATTAGAAGAAGCAAAGGATTTCATTCA TAAGATGCCTTTCTGTCCGGATGCGATCGGTTGGGCTACATTGCTGAGCTCTTGCAGATTCCATTCTAATCTCGAGATAGGGAAATGGGCGGCTGAGTCT CTGCTCGAAGTAGATCCCAACAATCCTGCAGCTTATATCTTGCTCACGAGTATCTACGCTTCTCGAGGAGAATGGAATGATGTCGCTCAGTTAAGGAGAG GAATGCGAGAGAAGGGATTAAGGAAAGATCCTGGATGCAGCTGGATCAAGTTCAAGAACAAGGTGTACATTTTCTCAGCAGACGACTTCTCCAGCCCGTT TTACGATCAGATAAACGCCAAGCTGGAGAACCTGTACGAGAAGATGGTACAGATGGGGTACGTGCCAGATGCCAGCTCAGTTCTGCATGACGTGGAGGAA TCTGAGAAGATAAAGATGCTCGGCCACCATAGCGAGAAGCTGGCAATCGCTTTCGGACTGTTATTCATCCCTCATGGCTGTCCTATAAGAGTAATTAAGA ACCTGAGGGTGTGTAAGGATTGTCACACTGTTACTAAGTACATCTCGAAGATAACTCAGCGGGAGATCCTTGTTAGAGATTCTGCCCGGTTCCATTTGTT TAAAGATGGAGCTTGCTCCTGTGGAGATTTCTGGTAA
AA sequence Show only first row Show all	>Lus10030908 pacid=23155290 polypeptide=Lus10030908 locus=Lus10030908.g ID=Lus10030908.BGIv1.0 annot-version=v1.0 MEMEISEKDKLELEKRDNVDNPMNYQSSGGGLSSDWRFGGGANVANSALGGAASCSSAAMGEESFGGPAGIWDHQASSQNIGFCDLINAPGTPLGMVKGG GALGMGWNPHSSMSRESGIFLPNPHGILPPSLSPFPADPAFIERASRFSCFSGGGQFSDMAHPFAMSEAMGLYSRGGGMIPVPPQEVFAGIGSKSLSGQR NMMMNPGECSTEVTDASLRMDHHAKTEESPLKSERRSESVVRSQDEVKPGVVRSGNDSDEAEFSGGGGQDDATMLEGNGGKLSLKGLDSRKRKRNGQDTE HDAGKGSQQSGESTKDGSEIHQKGGKNPSPAANKASGKNGKQGGSQVSDPAKEEYIHIRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCNKVTGK AVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNSLEGLLTKDILSSRAIPSANLPFSPEMPMPYPPLHPSQSGLIPTGFPAMANHSDILRRTIGSQLA SSSGEFKDPAQQLPSSWNEELHNVIQMYGAAGPQDSQEIAGTKLFLQLVYCETRNQSQVKKLHCHILRTLLNPEPFLSNNLINAYGQLRNPSYARNVFDE MPQRTPFSWNTLLSAYSKSGDLSQMQEIFNLMPITDGVSWNSLISGYANHGSVDEAVKAYGMMLRNGAGNVNRITFSTMLILCSSRERIELGRAIHGQIV RLGFRDYVFVGSALVDMYCKIGSVHEAVRSFDEIRERNVVMYNTLITGLLRNGMVEDAKRIFRSMKDRDSITWTTMITGFVQNGLDRDALDLFREMRVAE MEIDQFTFGSVLTACGGIKALHEGKQVHAFIVRKEFKGNVFVDSALLDMYCKSKNVSYAEAVFRRMKVRNVVSWTAMLVGYGQNGFSEQAIRIYSEMQRN GIKPEDFTLGSVISSCANLASLEEGTQFHARALMSGLISSITVSNALITLYGKCGSVEECDRLFHEMKFRDEVSWTAMVSGYAQFGKAEKTIELFEEMLR QGLKPDSVAFIGVLSACSRAGLVERGNWYFESMSRDHGINPSCDHYTCMIDLLSRAGRLEEAKDFIHKMPFCPDAIGWATLLSSCRFHSNLEIGKWAAES LLEVDPNNPAAYILLTSIYASRGEWNDVAQLRRGMREKGLRKDPGCSWIKFKNKVYIFSADDFSSPFYDQINAKLENLYEKMVQMGYVPDASSVLHDVEE SEKIKMLGHHSEKLAIAFGLLFIPHGCPIRVIKNLRVCKDCHTVTKYISKITQREILVRDSARFHLFKDGACSCGDFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10030908 [exp]	0	1
AT3G49350			Ypt/Rab-GAP domain of gyp1p su...		Lus10008839 [exp]	1.7	0.8462
					Lus10025143 [exp]	2.4	0.8353
AT5G36930			Disease resistance protein (TI...		Lus10007836 [exp]	3.2	0.8489
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10004508 [exp]	3.5	0.8534
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10026614 [exp]	4.6	0.8150
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10020727 [exp]	7.2	0.8416
AT4G15520			tRNA/rRNA methyltransferase (S...		Lus10034004 [exp]	7.5	0.7896
AT2G36330			Uncharacterised protein family...		Lus10042123 [exp]	8.1	0.8035
AT1G06510			unknown protein		Lus10001505 [exp]	9.2	0.8374
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10035475 [exp]	11.0	0.8034

Compare expression of checked genes

Lus10030908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.