Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44480 475 / 2e-163 BGLU17 beta glucosidase 17 (.1.2) AT5G24550 474 / 4e-163 BGLU32 beta glucosidase 32 (.1) AT3G60140 459 / 1e-156 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT5G24540 453 / 1e-154 BGLU31 beta glucosidase 31 (.1) AT3G60120 451 / 1e-153 BGLU27 beta glucosidase 27 (.1) AT2G44470 450 / 9e-153 BGLU29 beta glucosidase 29 (.1.2.3) AT2G44460 442 / 9e-150 BGLU28 beta glucosidase 28 (.1) AT5G44640 437 / 1e-148 BGLU13 beta glucosidase 13 (.1) AT5G42260 432 / 5e-147 BGLU12 beta glucosidase 12 (.1) AT1G26560 431 / 3e-146 BGLU40 beta glucosidase 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030577 [exp] 917 / 0 AT5G24550 461 / 2e-157 beta glucosidase 32 (.1) Lus10030518 [exp] 887 / 0 AT5G24550 485 / 3e-167 beta glucosidase 32 (.1) Lus10012869 [exp] 883 / 0 AT5G24550 467 / 4e-160 beta glucosidase 32 (.1) Lus10039513 [exp] 882 / 0 AT2G44480 472 / 3e-162 beta glucosidase 17 (.1.2) Lus10030516 [exp] 873 / 0 AT2G44480 476 / 4e-164 beta glucosidase 17 (.1.2) Lus10024152 [exp] 871 / 0 AT5G24550 479 / 1e-164 beta glucosidase 32 (.1) Lus10012871 [exp] 853 / 0 AT5G24550 466 / 1e-157 beta glucosidase 32 (.1) Lus10012868 [exp] 806 / 0 AT5G24550 435 / 1e-145 beta glucosidase 32 (.1) Lus10011828 [exp] 755 / 0 AT2G44480 438 / 4e-146 beta glucosidase 17 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G015100 [exp] 532 / 0 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.005G059500 [exp] 517 / 2e-179 AT3G60120 517 / 8e-180 beta glucosidase 27 (.1) Potri.004G040700 [exp] 511 / 8e-178 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.T085301 [exp] 501 / 7e-174 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 501 / 1e-173 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.001G223300 [exp] 496 / 1e-171 AT2G44480 529 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222904 [exp] 494 / 4e-171 AT2G44480 531 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222900 [exp] 494 / 5e-171 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222704 [exp] 494 / 7e-171 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.004G110691 [exp] 489 / 4e-169 AT2G44480 524 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10030911 pacid=23155353 polypeptide=Lus10030911 locus=Lus10030911.g ID=Lus10030911.BGIv1.0 annot-version=v1.0 ATGGACAAAGCTTCCTTCAACTTGATCCTTTTTGCTGTCCTCTTGGGTCTAGCTCAGGCCGACCTTGCTCGAATCAAACACGACCTCTGCGATGACTCCC CCTACGTATACCGTCCCTCGAAGGAGCTTCCTCGTGGCCGTTTCGAATTCCCCAAAGGGTTCATCTTTGGAACCTCCACATCTTCTTATCAGATCGAAGG CGCTGCAAATTTCACGTACGGAAAGGGTCCGAGCGTCTGGGATAGATTTACTCATGACTTTCCAGATAGGATTCTGGGAGGTGGTAATGGAGATGTGGCG ATAGATTATTATCACAGGTTCAAGGAAGATATAGTGAGAATGAAGTATTTGAACATAGATGCTTACAGATTTTCCATCTCTTGGTCTCGAATCATACCGT CTGGCAAGAGAAGTGATGGAGTTAATAGAGAAGGAATCGAGTTTTACCATAGGATCCTTGATGATCTCATTGAGCATGAAATCAAGCCTGTTGTCACAAT ATGGCACTGGGATACTCCTCAAGGTCTTGAGGCTGAGTATGGTGGCTTTTTAAGTCGCGACATTGTGAAAGACTTTGAGGATTACTGTGACGTATTGTTT CAAGAATATGGTGAGAAAGTATATAAGTGGATAACTTTGAACGAGCCTCAGGGTCTCTCAGTGAAAGCGTATGATGAAGGAGTTTTTGCACCTGGACATT GTTCTGCATGGGTTAATAGAAAATGTCTACTTGGAGATTCCGCAACTGAACCTTATATTGTTACACATAATCTTCTTCTTGCTCATTCCGCCGTTTACCA CTTATACAAAAACAAGTATCAGAATCTTACCGCAGAAATAGGAATTACCCTTATCACATATTGGTTCGTTCCTTACTCTAATACAACAGAAGACATTGAT GCTGCCCAAAGAGCTTTGGACTGGATGTTTGGTTGGTACATGGATCCAATAACCTATGGACACTATCCTAGAATCATGATAGAATTATTGGGATCTCGTT TGCCGAAATTCACAGAAAATGAGTCACACTTGCTTAAAAAGTCATATGACTTTTTGGGCCTAAATTATTACACTGGTTACTATGTTAGGAACAATGATAA TTTTGATCATTCTCATCTTCGATATGCAACAGATAACCACGGCATTACTACACCTGATAGAGACGGACAATACATCGGACCACATTTGGGTTCGTACTGG CATTATCTATATCCCGAAGGTTTGCGAGTGCTATTGGAGTACACTAAGGAAAAATATGAAGACCCCATTATTTACATTACCGAAAGTGGATTGTCGAGGA AGGACAATGCTACACAAACACTTGAAGAGGCACTAGATGACCAAATCAGGATTGGTTTTTACAACAGTCATCTTACAAGTGTGAAGCAAGCCATGATCGA GAAGCAGGTGAACGTGAAAGGGTTCTTCGCATGGTCGTATATCGACAACTTCGAATGGAACGAAGGATACACAGTCAGGTTCGGGCTGTACTACATTAAC TACACCGATCTCTCCGTACACCCCAAGTACTCTGCATGCTGGTTCACCAATTTTTGCAGCAAATCCCGACCAAAGTCTTTTGATTACTTTGATCTTGACA AGCTCATCGCTACTCGTGCTTCTCCCGGTGGCCGTCGGGCTCTCTCCTCCGTCGAACAATAA
AA sequence Show only first row Show all	>Lus10030911 pacid=23155353 polypeptide=Lus10030911 locus=Lus10030911.g ID=Lus10030911.BGIv1.0 annot-version=v1.0 MDKASFNLILFAVLLGLAQADLARIKHDLCDDSPYVYRPSKELPRGRFEFPKGFIFGTSTSSYQIEGAANFTYGKGPSVWDRFTHDFPDRILGGGNGDVA IDYYHRFKEDIVRMKYLNIDAYRFSISWSRIIPSGKRSDGVNREGIEFYHRILDDLIEHEIKPVVTIWHWDTPQGLEAEYGGFLSRDIVKDFEDYCDVLF QEYGEKVYKWITLNEPQGLSVKAYDEGVFAPGHCSAWVNRKCLLGDSATEPYIVTHNLLLAHSAVYHLYKNKYQNLTAEIGITLITYWFVPYSNTTEDID AAQRALDWMFGWYMDPITYGHYPRIMIELLGSRLPKFTENESHLLKKSYDFLGLNYYTGYYVRNNDNFDHSHLRYATDNHGITTPDRDGQYIGPHLGSYW HYLYPEGLRVLLEYTKEKYEDPIIYITESGLSRKDNATQTLEEALDDQIRIGFYNSHLTSVKQAMIEKQVNVKGFFAWSYIDNFEWNEGYTVRFGLYYIN YTDLSVHPKYSACWFTNFCSKSRPKSFDYFDLDKLIATRASPGGRRALSSVEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030911 [exp]	0	1
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10004042 [exp]	3.0	1.0000
					Lus10011962 [exp]	4.2	1.0000
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10012601 [exp]	5.2	1.0000
					Lus10022805 [exp]	6.0	1.0000
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	6.7	1.0000
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	7.3	1.0000
AT5G04350			Plant self-incompatibility pro...		Lus10029388 [exp]	7.9	1.0000
					Lus10030558 [exp]	8.5	1.0000
					Lus10033534 [exp]	9.5	1.0000
					Lus10022068 [exp]	9.8	0.8803

Compare expression of checked genes

Lus10030911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.