Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68890 1662 / 0 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1) AT1G18870 89 / 6e-18 ATICS2, ICS2 ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, isochorismate synthase 2 (.1.2) AT1G74710 87 / 6e-17 ATICS1, SID2, EDS16, ICS1 SALICYLIC ACID INDUCTION DEFICIENT 2, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, ADC synthase superfamily protein (.1.2) AT3G48560 51 / 7e-06 TZP5, IMR1, ALS, AHAS, CSR1 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) AT5G17780 47 / 9e-05 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G24140 44 / 0.0007 BDG3 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023622 [exp] 94 / 3e-19 AT1G74710 623 / 0.0 SALICYLIC ACID INDUCTION DEFICIENT 2, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, ADC synthase superfamily protein (.1.2) Lus10016751 [exp] 54 / 1e-06 AT3G48560 1048 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10041747 [exp] 50 / 8e-06 AT2G18360 436 / 1e-154 alpha/beta-Hydrolases superfamily protein (.1) Lus10022445 [exp] 47 / 4e-05 AT3G48560 325 / 7e-108 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10038649 [exp] 48 / 5e-05 AT4G15960 420 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10011204 [exp] 47 / 0.0001 AT4G02340 181 / 8e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10021315 [exp] 47 / 0.0002 AT3G52570 397 / 2e-136 alpha/beta-Hydrolases superfamily protein (.1) Lus10020434 [exp] 47 / 0.0002 AT3G18270 483 / 6e-171 "cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene", cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene (.1) Lus10010293 [exp] 46 / 0.0002 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G135500 [exp] 1937 / 0 AT1G68890 1931 / 0.0 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1) Potri.012G070000 [exp] 82 / 2e-15 AT1G18870 628 / 0.0 ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, isochorismate synthase 2 (.1.2) Potri.010G010800 [exp] 54 / 4e-07 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 54 / 4e-07 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G122600 [exp] 53 / 1e-06 AT2G18360 444 / 5e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G098300 [exp] 52 / 3e-06 AT3G48560 1052 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.013G099900 [exp] 51 / 3e-06 AT4G10050 549 / 0.0 esterase/lipase/thioesterase family protein (.1) Potri.002G202700 [exp] 50 / 5e-06 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G054200 [exp] 51 / 6e-06 AT3G18270 536 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene", cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene (.1) Potri.014G127200 [exp] 50 / 1e-05 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02775 [flax] [poplar] TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CL0254 [flax] [poplar] THDP-binding PF02776 [flax] [poplar] TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10030915 pacid=23155418 polypeptide=Lus10030915 locus=Lus10030915.g ID=Lus10030915.BGIv1.0 annot-version=v1.0 ATGGAGGCGGGGCTTCAGAGTATTAAGGACGTTGTGGAGGAGTTAAAGCGGAATCCCCCTTCTTCTAGCAGTGGAGTTTTGCGGTTTCAGGTTGCTCTGC CTCCTAGCCCAAAAGCTTTGAATTGGTTTTGTGCCTATCCACCTTTGTCTGGGGTGTTCCCTCGATTTTTCATTTCCAAGGAAACTGCTGATCCGTCGTG TAAAACTCTCAACCTCAATAGAACACATGGCGTTCTCGGAATTGGGGCCGCAATTTACTTTACTCATTCCTCTTGTAGTTCTCCTGGAGACCGAAGCTTA ATTAGAAGATATATCTCAAGTGATGCAGTTGGTATGACTGCTTATGGTTTTGAGGACGTCAATTTTCAATCTTCATTCAAGCTTGAAACTGGTTCTGTAT ACTTTTGCATTCCAGAGATTGAATTAGATGAGCTTGGGGATACTTCTATTCTATCAGCAACACTGGCTTGGAACGACTCTACTTCCAATATAATTAGGCA GGCAATTCAATCATTGGAGTTATCCTTACGTGAGGCCAATTATCATTTTTGGACAGCCACATGCCAAAGTATAACATCAGCCCTTGGAAAAGCAAATCTG TCAGAGAACGGAACCTTAAGAATGTTAGATCTGGCCGGTGGAACAAACTACCACTTGCAACATCACCCAAACATCAATGCAGTTTGGGCATCACTTATAG TAGAAGAATGCACCCGCCTTGGTCTGACGTTCTTTTGTATAGCTCCTGGGTCAAGATCTTCACCACTTGCAATTGCTGCTTCATCTCACAACAAAACCAC TTGCATTGCTTGCTTTGATGAGCGTGCACTTGCTTTTCATGCTGTCGGTTACTCAAAGGCATCTCAGAAACCAGCAGTCATCATAACATCATCAGGCACT GCAGTTTCGAATCTTCATCCTGCTGTTGTGGAAGCTAGTCAGGAATTTGTTCCATTACTATTGTTAACTGCTGACCGTCCTCCAGAGCTGCAGGATACTG GGGCAAATCAAACAATTAATCAAGTGAACCATTTCGGTTCTTTTGTCAGGTTCTTCTTCAGTCTTCCTGCACCCAGTGATGATATTCCTGCTCGGATGGT ACTGACAACACTCGACTCTGCTGTTAATTGGGCTACTTCTCCACCATATGGTCCGGTTCATATTAACTGTGCATTCAGAGAACCTCTAGATGATAGTCCA AAAAAATGGATGTTGAGCTGTTTGACAGGATTGGATAGTTGGATGTGTAAAAGTGAACCGTTCACTAAATACATCAAAGAACATTACCGTGTCACCTCAA ATATTCCCATGTTGACAGAAGTGATTGAGATAATTCAAGGAACTAATAGAGGGCTGCTTCTAATATGTGCTTTGGACGACGAAGACGAGATATGGGCTGC TCTTATATTGGCAAAACATCTCCATTGGCCAGTTGTAGCTGACATTTTATCTGGCTTGCGTCTAAGAAAAGTTTTGGCAACTTGTCCTGAAGTTCAGGAG ACTGTTGTATTCCTTGACCATCTAGACCATGTTCTGCTCTCAAAGTCGGTCAAGAGTTCCATTCAATTCAATGTGATTTTGCAGATTGGAACACGGATAA CGAGCAAGCGTATCTCTCAGATGTTGGAGGAATGTAATCCACACTCTTATATCATAGTTGACAATCATCCATGTCGCCACGATCCATCACATGTTGTCTC ACACAGAATCCAAAGCTCAATCATTCAGTTTGTTGATAACTTAATGAAAGTGCAGTTTCCTCATGCAACCAGGAACTTTTGTTCTTATTTACAAGCTTTG AACGAGATGGTGGCATGGGATATATCGTTTCAGATTGCAGCCGAGCGCTCCTTAACTGAGCCTCATGTTGCACAAGTAATTTCAGAAATACTTGATGCAG AGTTTGTGCTTTTTGTTGGAAATAGCATGCCAATACGTGATTCTGATATGTATGGCCGTAGTTGGAAACATCAAACCTGCACAGCTGCAGACATCCTGTC TTGCTCTGAACTTCCATGTCTGGGGATTCGGGTTTCTGGAAACAGAGGAGCTAGTGGTATTGATGGTTTGCTTAGCACGGCAACTGGTTTTGCTACTGGA TGCAATAGACGGGTTCTTTGCGTGATTGGAGATGTTTCTTTCCTTCATGATACAAATGGCTTGTCATTACTGAACTGCAGGACGTTGCGCAAACCAGTGA CTGTACTTGTGATTAACAATCATGGTGGAGCAATCTTTGGCCTTCTTCCTATTGCAGATAGGACTAGTCCAACAGTTTTGAGTCAGTACTTCTACACCAC ACACGACATATCCATCCAGAAGTTGTGCCTGGCTCACAGAATCCATTGGGCGGACTTACAGCTCGTATATCTAATGATATTCTGGGACAATGATCTTTCT AATCTTGTGTCTGATCTTTCCGTGGAGTCAAGTGTCAGACATTTGCTAGTGAAGACAAAAGCAGAACTTCAAGACGCTTTGGTCTCATCTCGGGATGATG CATCTAATTGTGTAATTGAAGTGGAGAGTGGCATTGATGCCAATACTACTTTCCACAGTAGTTTAAGACAATCTGCCCGTGGAGCAGCAGATAATGCTCT AAGCAGTCTTTCAAGGCTTTCTGTTCCCAGTTCAGATGGATTCCTTTTCTGCAAGATGGAGTTTTCCTTTTACAGAATTCAACTATGTGCACCAACTACA GCATCCTCTCTGTGTGATAGAAGTGAGTTCCATAAAGAAGGATATGTCTTGTCTTTGTTTCTGGAAGACGGAACTGTTGGTTATGGTGAGGTTGCACCTC TCGAAATCCACAAAGAAAGTCTGGCAGATGCAGAAGAACAACTTCGGTTTCTTTGTCATGTTATTGAAGGGGCAAAAATATCATGCACTCTTCCTTTGCT TAAGGGAACATTTACTTCTTGGTTGTGGAACAGCTTGGGAATCCCGGAATGTTCGATCTTTCCAAGTGTCAGATGTGGTCTGGAAATGGCTATCCTCAAT GCCATGGCTGCAAGAACAGGTTCCAGCTTGTTAGACATTCTTCTACCTCAGAAAGCAACAGAAGAAATGCCTGGAATGCCAGAACATGTTAGATTATGCG CCCTCCTTGATTCCAATGGCATGCCCCATGAAGTTGCTTATATTGCTGCATCCCTAGTTGCAGAAGGGTTCACAGCAATAAAGCTTAAAGTGGCTCGGCG GAAGAATCCAATGGAAGATGCTGCAGTATTGCAGGAAGTGAGAAAGGCGGTTGGTTGGGAAATCCAACTCCGTGTGGATGCTAATAGAAAATGGACCTTT GAAGAGGCCATTCTCTTTGGTTCTCTTGTAAAACATTCCGACCTACAGTATATTGAGGTGGAATGCGATGCTCAACATTGTTTTGCTGCTTGGATGCCTT TGCTGGAACCAGTTCAAAACGAAGAAGAAATAATAAAATACTGCAATGAAAGTGGCTTGCCGGTAGCACTTGATGAAACGATCGACAATATCTCTGGAAA CCCTCTTGATATTCTTGCGAAGTATGCTCATCCAAACATAGTTGCTGTGGTTATTAAACCAGGTGTAGTTGGTGGCTTTGAGAAGGCAGCGCTAATTGCA CGTTGGGCACAGAAGCAAGGGAAGATGGCCGTTGTGAGTGCTGCTTTTGAAAGTGGACTCTCTTTGTCCACATATGCTGTGTTCTCTTATTACCTGGAGA TGCACCATGCTGATCTCTACAAGGTTGGCCCCCGCCCGCCGGTAGCTCATGGTCTTGGAACTTACCGATGGCTTAAGCAAGATACAAGCACTCGTCAACT TCGAGTAAGTCCCGATCCATGCAGTGGGTCAATGGGAGTATTCACGGCAGATGCAATTCAACACTTGCAGCAGTTTCAGCTTGATGACAACATTATCCGC CGAACGTTTAGTGGAGAGGAAGTCCGCACGTATACCTTGGCTGTGAAAACCAATGAGCTTTCTTCTTGCTCCATCAGAATTCGTGAAGTTGGGCCGACAA ATTGTTGTCTCGACGGTAAAGTTGTGGTATTTCTGCACGGATTTCTTGGTACCGGTGAAGACTGGATCCCCATCATGAAGGCCATCTCCGGATCTGCAAG ATGCATTTCAGTTGATCTACCCGGGCACGGGGAGACGAAGATTCAAACACAAGACCGGACTTGGTCAGTCAAAAGAGTTTCCAAGCTACTTTACAAGTTG ATCGAAGATGTAGCTCCTGGAAGCGTCACACTTGTTGCATATTCAATGGGAGCAAGGATTGCATTACATATGGCATTGCGACATGACGATAAGATTAATG GAGCCGTCATAATATCCGGTAGCCCTGGGCTAAAGGACGGAATGGGTAGGAAAATTCGGAGGGCTAAAGATGATTCGAGAGCTCGCAATCTCATCGCATA TGGTTTGCAGACCTTTCTGAGCTCTTGGTACGCTGGGAAACTGTGGAAAAGCTTGAGATGCCATCCTTGTTACAAGGAAGTCGTGGTGAGTCGGTCACGA TCTGGCGATGCTCGGAGCCTTGCAAAAGCTCTGACCGACCTAAGCATAGGGAGACAAGAACCATTGTGGGATGACTTGAAGCATTGCAAGCTGCCCCTAC TGTTCGTTGTGGGAGCACAAGATGACAAGTTCAAGGCAATTGCTCGGAAAATGCTCGAAGAAATCGAGACAGAGAGTTGTTGCAAGAGTGAGATAGTCGA GGTTCCAGTAAGTGGTCATGCTGTCCATTTGGAGAACCCTCTGCATCTCATCCATGCTCTTAGCCAATTTGTTGCCAGAATAAGGAACGATGGTGAAGAC TAA
AA sequence Show only first row Show all	>Lus10030915 pacid=23155418 polypeptide=Lus10030915 locus=Lus10030915.g ID=Lus10030915.BGIv1.0 annot-version=v1.0 MEAGLQSIKDVVEELKRNPPSSSSGVLRFQVALPPSPKALNWFCAYPPLSGVFPRFFISKETADPSCKTLNLNRTHGVLGIGAAIYFTHSSCSSPGDRSL IRRYISSDAVGMTAYGFEDVNFQSSFKLETGSVYFCIPEIELDELGDTSILSATLAWNDSTSNIIRQAIQSLELSLREANYHFWTATCQSITSALGKANL SENGTLRMLDLAGGTNYHLQHHPNINAVWASLIVEECTRLGLTFFCIAPGSRSSPLAIAASSHNKTTCIACFDERALAFHAVGYSKASQKPAVIITSSGT AVSNLHPAVVEASQEFVPLLLLTADRPPELQDTGANQTINQVNHFGSFVRFFFSLPAPSDDIPARMVLTTLDSAVNWATSPPYGPVHINCAFREPLDDSP KKWMLSCLTGLDSWMCKSEPFTKYIKEHYRVTSNIPMLTEVIEIIQGTNRGLLLICALDDEDEIWAALILAKHLHWPVVADILSGLRLRKVLATCPEVQE TVVFLDHLDHVLLSKSVKSSIQFNVILQIGTRITSKRISQMLEECNPHSYIIVDNHPCRHDPSHVVSHRIQSSIIQFVDNLMKVQFPHATRNFCSYLQAL NEMVAWDISFQIAAERSLTEPHVAQVISEILDAEFVLFVGNSMPIRDSDMYGRSWKHQTCTAADILSCSELPCLGIRVSGNRGASGIDGLLSTATGFATG CNRRVLCVIGDVSFLHDTNGLSLLNCRTLRKPVTVLVINNHGGAIFGLLPIADRTSPTVLSQYFYTTHDISIQKLCLAHRIHWADLQLVYLMIFWDNDLS NLVSDLSVESSVRHLLVKTKAELQDALVSSRDDASNCVIEVESGIDANTTFHSSLRQSARGAADNALSSLSRLSVPSSDGFLFCKMEFSFYRIQLCAPTT ASSLCDRSEFHKEGYVLSLFLEDGTVGYGEVAPLEIHKESLADAEEQLRFLCHVIEGAKISCTLPLLKGTFTSWLWNSLGIPECSIFPSVRCGLEMAILN AMAARTGSSLLDILLPQKATEEMPGMPEHVRLCALLDSNGMPHEVAYIAASLVAEGFTAIKLKVARRKNPMEDAAVLQEVRKAVGWEIQLRVDANRKWTF EEAILFGSLVKHSDLQYIEVECDAQHCFAAWMPLLEPVQNEEEIIKYCNESGLPVALDETIDNISGNPLDILAKYAHPNIVAVVIKPGVVGGFEKAALIA RWAQKQGKMAVVSAAFESGLSLSTYAVFSYYLEMHHADLYKVGPRPPVAHGLGTYRWLKQDTSTRQLRVSPDPCSGSMGVFTADAIQHLQQFQLDDNIIR RTFSGEEVRTYTLAVKTNELSSCSIRIREVGPTNCCLDGKVVVFLHGFLGTGEDWIPIMKAISGSARCISVDLPGHGETKIQTQDRTWSVKRVSKLLYKL IEDVAPGSVTLVAYSMGARIALHMALRHDDKINGAVIISGSPGLKDGMGRKIRRAKDDSRARNLIAYGLQTFLSSWYAGKLWKSLRCHPCYKEVVVSRSR SGDARSLAKALTDLSIGRQEPLWDDLKHCKLPLLFVVGAQDDKFKAIARKMLEEIETESCCKSEIVEVPVSGHAVHLENPLHLIHALSQFVARIRNDGED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68890			magnesium ion binding;thiamin ...		Lus10030915 [exp]	0	1
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10001220 [exp]	1.4	0.9679
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10013636 [exp]	1.7	0.9689
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001332 [exp]	2.4	0.9673
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10012019 [exp]	4.9	0.9406
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10042231 [exp]	5.0	0.9441
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001331 [exp]	6.5	0.9403
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003578 [exp]	6.9	0.9471
AT3G13490		ATKRS-2, OVA5	OVULE ABORTION 5, ARABIDOPSIS ...		Lus10010317 [exp]	6.9	0.9337
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10020342 [exp]	9.8	0.9395
AT4G31210			DNA topoisomerase, type IA, co...		Lus10026991 [exp]	10.4	0.9366

Compare expression of checked genes

Lus10030915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.