Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26230 831 / 0 Cpn60beta4 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) AT3G13470 727 / 0 Cpn60beta2 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) AT1G55490 726 / 0 Cpn60beta1, LEN1, CPN60B LESION INITIATION 1, chaperonin-60beta1, chaperonin 60 beta (.1.2) AT5G56500 721 / 0 Cpn60beta3 chaperonin-60beta3, TCP-1/cpn60 chaperonin family protein (.1.2) AT2G28000 450 / 6e-152 Cpn60alpha1, SLP, CH-CPN60A, CPN60A SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) AT3G23990 436 / 2e-146 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) AT2G33210 429 / 1e-143 HSP60-2 heat shock protein 60-2 (.1.2) AT3G13860 417 / 4e-139 HSP60-3A heat shock protein 60-3A (.1) AT5G18820 371 / 2e-121 Cpn60alpha2, EMB3007 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) AT3G11830 67 / 2e-11 TCP-1/cpn60 chaperonin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013404 [exp] 743 / 0 AT3G13470 1037 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10010321 [exp] 743 / 0 AT3G13470 1041 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10037386 [exp] 450 / 1e-151 AT2G28000 960 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Lus10022832 [exp] 439 / 1e-147 AT3G23990 980 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011898 [exp] 437 / 6e-147 AT3G23990 987 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011902 [exp] 434 / 1e-145 AT3G23990 964 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011770 [exp] 424 / 3e-140 AT3G23990 994 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10038352 [exp] 395 / 2e-130 AT5G18820 767 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Lus10041329 [exp] 391 / 3e-129 AT2G28000 845 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G135100 [exp] 862 / 0 AT1G26230 813 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Potri.003G222400 [exp] 737 / 0 AT3G13470 1033 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.001G002500 [exp] 734 / 0 AT3G13470 1030 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.004G213400 [exp] 463 / 7e-157 AT2G28000 964 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.009G009300 [exp] 457 / 2e-154 AT2G28000 919 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.003G173900 [exp] 446 / 4e-150 AT3G23990 1016 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.001G054400 [exp] 443 / 4e-149 AT3G23990 1018 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.002G252900 [exp] 436 / 3e-146 AT3G23990 995 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.015G122800 [exp] 414 / 8e-138 AT5G18820 821 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Potri.003G039475 [exp] 360 / 7e-117 AT3G13860 810 / 0.0 heat shock protein 60-3A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10030917 pacid=23155375 polypeptide=Lus10030917 locus=Lus10030917.g ID=Lus10030917.BGIv1.0 annot-version=v1.0 ATGGCGTCCTCCACGCCGTCTCCAATCTCCGCAACATCATTTGATAAACCCAAACTCCCCAGAAGGAGGCTACCCAGGTCGTCGTCTTCGTCGCCGCCGT CCCCTTCTTCCGTGCCGAACACAATGGCCATGTCCAAGGAGCTTCATTTCAACCGCGATGGTTCCACCACGAAGAAACTTCTGGCAGGAGTGGAACTCGT GGCGGAGCTCGTCGGGGTGACTCTAGGTCCTAAAGGACGGAATGTGGTGTTGCAGAACAAGTATGGGCCTCCCAAGATTGTCAACGACGGAGAAACAGTC CTCAAGCAGATTGAATTGGAGGATCCTCTGGAAAATGTTGGGGTGAAATTGGTGAGGCAAGCTGGAGCAAAAACAAATGACCTTGCTGGTGATGGTTCCA CTACTTCTGTAATTCTAGCCCATGGTTTGATCAGAGAAGGTGTGAAGGTGATTGCGGCCGGTATGAACCCGGTCCAAATTGCTCGTGGGATTGAGAAAAC TTCAATAGCCCTTGTTTCTGAACTTAGATCCATGTCAAGAGAGGTTGAGGATAATGAGCTTGCTGATGTTGCTGCAGTTAGTGCAGGGAATGACTATCAA GTAGGAAACATGATAGCTGATGCTCTCCAGCAAGTGGGGAAAGAAGGCGTTGTCACAATCGAGCAGGGAAAGAGTACCGAAAACAGTTTGCAGATTGTGA GAGGAATGCAGTTCAACCGTGGATATTTGTCTCCTTATTTCGCGACTGATAGAAGGAAAAGGATAGTGGAGTTTCATGATTGCAAGCTGCTTTTGGTTGA CAAAAAGATTACAGACCCGAAGGCAATGTTTAAGATTTTGGACAGTGCAGTTAAGGAGAAGTACCCAATTGTAATAATTGCAGAGAATATTGAGCAGGAA GCCTTGGCTCCAATTATCATGAACAAGCTCAAGGGTACTATCAAGGCAGCAGCTATTAAGGCTCCTGCATTTGGTGAGCTCAAAAGCCACTACTTAGATG ACATTGCTGTCCTGACAGGAGGAACTGTGATCAGAGATGATGCAGGGTTGACCCTAGAAAAAGCTGGCAAGGAGGTACTGGGCACTGCTACGAAGGTGTT GATAACAAAAGACTCGACGTTGATAGTTACTGATGGAAGCACTCAGGCAGCTGTTGATACTAGAGTTTCCCAGCTGCGGAATCTTGTTGAGAATACTGTA GAAAAGTCCGATAAGAAAACACTGAACGAAAGAATTGCAAGGTTGTCAGGAGGGATTGCCATTCTGCAGGTGGGAGCACAGACACAAATTGAGTTGAAAG ACAAACAACTGAGGATTGAAGATGCTTTAAACGCAACGAAGGCTTCAATTGAAGAAGGTGTGGTGGTTGGTGGTGGCTGCAGCCTTTTAAGGCTAGCTGC AAAGGTCGCCATGATTAAAGAACATCTGGATAATGAAGAGCAGAAGATTGGAGCTGAAATCTTCCGCAGAGCGTTGAGCTATCCCGCAAGACTGATAGCC AAGAATGCCGGCAAAAACGGAAATGTTGTGATCAACCAGGTCCTATCGAATGATGACCCGAGATATGGATACAACGCTGCCAAGGACAGATACGAGGACT TGATGACTGCAGGGATCATGGATCCAACAAAGGTTGTCCGATGCTGCTTGGAGAATTCTGCATCGGTGGCAAAGACATTTCTTACGTCGGATGCTGTTGT AGTCGACACCACAGAACGAAAGCCTCTTCCGAGGACAATGCCAGCCCCGATGCCTCCCAATCCAATGAATCCAACCATCCCTGGCAGAAAAAGAGGTCAA AACTCAAAACTTGTTCCTCAAGAATCAGAGACTTGGACCTCTGAGGGTATAATATCAGACCAGTAG
AA sequence Show only first row Show all	>Lus10030917 pacid=23155375 polypeptide=Lus10030917 locus=Lus10030917.g ID=Lus10030917.BGIv1.0 annot-version=v1.0 MASSTPSPISATSFDKPKLPRRRLPRSSSSSPPSPSSVPNTMAMSKELHFNRDGSTTKKLLAGVELVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETV LKQIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSVILAHGLIREGVKVIAAGMNPVQIARGIEKTSIALVSELRSMSREVEDNELADVAAVSAGNDYQ VGNMIADALQQVGKEGVVTIEQGKSTENSLQIVRGMQFNRGYLSPYFATDRRKRIVEFHDCKLLLVDKKITDPKAMFKILDSAVKEKYPIVIIAENIEQE ALAPIIMNKLKGTIKAAAIKAPAFGELKSHYLDDIAVLTGGTVIRDDAGLTLEKAGKEVLGTATKVLITKDSTLIVTDGSTQAAVDTRVSQLRNLVENTV EKSDKKTLNERIARLSGGIAILQVGAQTQIELKDKQLRIEDALNATKASIEEGVVVGGGCSLLRLAAKVAMIKEHLDNEEQKIGAEIFRRALSYPARLIA KNAGKNGNVVINQVLSNDDPRYGYNAAKDRYEDLMTAGIMDPTKVVRCCLENSASVAKTFLTSDAVVVDTTERKPLPRTMPAPMPPNPMNPTIPGRKRGQ NSKLVPQESETWTSEGIISDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26230		Cpn60beta4	chaperonin-60beta4, TCP-1/cpn6...		Lus10030917 [exp]	0	1
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10022020 [exp]	1.4	0.9547
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023515 [exp]	2.0	0.9492
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Lus10023741 [exp]	3.0	0.9238
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10010769 [exp]	3.9	0.9349
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10020342 [exp]	3.9	0.9484
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10029064 [exp]	5.3	0.9297
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10027371 [exp]	6.6	0.9374
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10033717 [exp]	7.7	0.9179
AT3G02450			cell division protein ftsH, pu...		Lus10003049 [exp]	11.0	0.9223
AT5G08540			unknown protein		Lus10017363 [exp]	12.4	0.9081

Compare expression of checked genes

Lus10030917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.