Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13580 467 / 5e-167 LOH3, LAG13 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) AT3G25540 436 / 9e-155 LAG1 LONGEVITY ASSURANCE GENE 1, TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT1G26200 360 / 1e-124 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT3G19260 234 / 1e-75 LOH2, LAG1 HOMOLOG 2, LAG1 HOMO, LAG1HOMOLOG2 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030571 [exp] 620 / 0 AT1G13580 491 / 2e-176 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10013063 [exp] 503 / 0 AT1G13580 469 / 3e-168 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10029096 [exp] 502 / 0 AT1G13580 487 / 2e-175 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10007964 [exp] 315 / 4e-107 AT1G13580 383 / 3e-134 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10013494 [exp] 314 / 2e-106 AT1G13580 381 / 1e-133 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10019859 [exp] 214 / 1e-67 AT3G19260 343 / 7e-119 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1) Lus10014055 [exp] 210 / 4e-66 AT3G19260 316 / 2e-108 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134700 [exp] 488 / 2e-175 AT1G13580 444 / 1e-158 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Potri.008G113900 [exp] 479 / 6e-172 AT1G13580 438 / 4e-156 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Potri.015G055000 [exp] 398 / 9e-140 AT1G13580 378 / 3e-132 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Potri.009G101800 [exp] 242 / 8e-79 AT3G19260 334 / 2e-115 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1) Potri.004G141000 [exp] 237 / 1e-76 AT3G19260 364 / 2e-127 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03798 [flax] [poplar] TRAM_LAG1_CLN8 TLC domain
Representative CDS sequence Show only first row Show all	>Lus10030918 pacid=23155407 polypeptide=Lus10030918 locus=Lus10030918.g ID=Lus10030918.BGIv1.0 annot-version=v1.0 ATGGGTGTCATGGAGCTTCTGAAATCCGTTGACTGGGAGCACGAGTCCTACCCAGCTTACGAAGACTACGTTGTTCTTCCTTTCTTTATCGTCTTCTTCC CCACCGTCCGATTCTTCCTAGACAGATTCCTCTTTGAGAAAGTGGGGAGGAGACTGATATTTGGGAAAGGTAACCAGGTCGTGAAGAACGAAGCAGCAGA CAGGAAGAAGAAGATACGGAAATTCAAAGAATCGGCGTGGAAATGCATTTACTTCCTCTCCGCGGAGATTTTCGCTATATCTGTCACATACAATGAGCCT TGGTTTACAAACACAATGTACTTTTGGATAGGACCTGGAGATCAAGTCTGGCCGGATCAACAAATGAAGTTGAAGTTGAAAGCAATGTACATGTATGCTG CTGGATTTTACACATACTCCATTTTTGCTCTCATATTTTGGGAAACAAGGCGTTCCGACTTTGGAGTCTCCATGAGCCATCATGTTGCTACTGTCATTCT CATAATTCTTTCCTACATATTCAGATTTGCTCGTGCTGGTTCGATTGTCCTAGCTATCCATGATGCGAGTGATGTATTTTTGGAGGTAGGAAAAATGTCC AAATACAGCGGTGCTGAAGGAACGGCAAGCTTTGCATTCATTCTTTTCGTACTGTCTTGGATCTTGCTTCGGCTCATTTATTATCCATTTTGGATCCTCT GGAGTACAAGCTATGAAGTTGTCATGGCCGTGGACAAGAAGAAACACGAGAGAGAAGGACCGATCTATTACTACGTGTTTAACTCTCTTCTATACTGCTT ACTTGTGCTCCATATATACTGGTGGGTATTGATTTATCGGATGCTCGTTAAGCAAATCCAAGCAAGAGGACAGCTAAGTGATGATGTTAGATCAGGTGAA CAGTTCCTGGGTTCAATGTGTCGGTATATTGATTTGAAGAGCTGCCTTGCCCCTATTAGATTACAAGGGACTGTAAATGGGATAAATGCAGCAGCATATT GA
AA sequence Show only first row Show all	>Lus10030918 pacid=23155407 polypeptide=Lus10030918 locus=Lus10030918.g ID=Lus10030918.BGIv1.0 annot-version=v1.0 MGVMELLKSVDWEHESYPAYEDYVVLPFFIVFFPTVRFFLDRFLFEKVGRRLIFGKGNQVVKNEAADRKKKIRKFKESAWKCIYFLSAEIFAISVTYNEP WFTNTMYFWIGPGDQVWPDQQMKLKLKAMYMYAAGFYTYSIFALIFWETRRSDFGVSMSHHVATVILIILSYIFRFARAGSIVLAIHDASDVFLEVGKMS KYSGAEGTASFAFILFVLSWILLRLIYYPFWILWSTSYEVVMAVDKKKHEREGPIYYYVFNSLLYCLLVLHIYWWVLIYRMLVKQIQARGQLSDDVRSGE QFLGSMCRYIDLKSCLAPIRLQGTVNGINAAAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10030918 [exp]	0	1
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10027795 [exp]	3.2	0.8933
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10022383 [exp]	4.2	0.8993
AT5G61330			rRNA processing protein-relate...		Lus10020496 [exp]	8.4	0.8843
AT5G01470			S-adenosyl-L-methionine-depend...		Lus10002489 [exp]	8.9	0.8698
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Lus10032746 [exp]	9.0	0.8858
AT5G03345			unknown protein		Lus10026529 [exp]	15.5	0.8737
AT1G26520			Cobalamin biosynthesis CobW-li...		Lus10026658 [exp]	16.6	0.8331
AT5G04980			DNAse I-like superfamily prote...		Lus10033398 [exp]	16.6	0.8252
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10039185 [exp]	17.3	0.8436
AT4G17190		FPS2	farnesyl diphosphate synthase ...		Lus10022545 [exp]	17.7	0.8701

Compare expression of checked genes

Lus10030918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.