Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26190 1000 / 0 Phosphoribulokinase / Uridine kinase family (.1) AT1G73980 838 / 0 Phosphoribulokinase / Uridine kinase family (.1) AT2G01460 199 / 1e-53 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G40870 82 / 5e-16 UKL1, ATUK/UPRT1 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) AT1G55810 81 / 5e-16 UKL3 uridine kinase-like 3 (.1.2.3) AT4G26510 80 / 2e-15 UKL4 uridine kinase-like 4 (.1.2) AT3G27190 77 / 2e-14 UKL2 uridine kinase-like 2 (.1) AT3G27440 71 / 9e-13 UKL5 uridine kinase-like 5 (.1) AT1G32060 66 / 4e-11 PRK phosphoribulokinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030570 [exp] 1304 / 0 AT1G26190 1018 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10009040 [exp] 904 / 0 AT1G73980 971 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10009678 [exp] 898 / 0 AT1G73980 962 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10025598 [exp] 218 / 3e-60 AT2G01460 1419 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10027063 [exp] 214 / 2e-58 AT2G01460 1457 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10041569 [exp] 84 / 9e-17 AT5G40870 853 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10035216 [exp] 83 / 3e-16 AT5G40870 850 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10021310 [exp] 81 / 1e-15 AT4G26510 753 / 0.0 uridine kinase-like 4 (.1.2) Lus10016989 [exp] 81 / 2e-15 AT4G26510 761 / 0.0 uridine kinase-like 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134400 [exp] 991 / 0 AT1G26190 968 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.008G110500 [exp] 969 / 0 AT1G26190 933 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.015G055400 [exp] 919 / 0 AT1G73980 953 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.008G130200 [exp] 209 / 5e-57 AT2G01460 1337 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G111900 [exp] 206 / 5e-56 AT2G01460 1325 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G069600 [exp] 87 / 1e-17 AT5G40870 852 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G332100 [exp] 86 / 2e-17 AT5G40870 820 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.017G071200 [exp] 81 / 9e-16 AT3G27440 707 / 0.0 uridine kinase-like 5 (.1) Potri.001G467800 [exp] 80 / 2e-15 AT1G55810 809 / 0.0 uridine kinase-like 3 (.1.2.3) Potri.011G165100 [exp] 79 / 2e-15 AT4G26510 818 / 0.0 uridine kinase-like 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0273 [flax] [poplar] CYTH PF01928 [flax] [poplar] CYTH CYTH domain CL0023 [flax] [poplar] P-loop_NTPase PF00485 [flax] [poplar] PRK Phosphoribulokinase / Uridine kinase family
Representative CDS sequence Show only first row Show all	>Lus10030919 pacid=23155252 polypeptide=Lus10030919 locus=Lus10030919.g ID=Lus10030919.BGIv1.0 annot-version=v1.0 ATGGGAGAAGATGCTTCGGGTTCTGAATCGCACCCAAAGAAGCAGGGACTTTTGAAAGACCAGGTTAGGTTGGCGAAGAGGAAGGATTCTGACCGATACA AGATTGTTCCAATTCAAGAGTCACTGTCATTCGAGAAGGGCTTCTTTGTAGTCATACGTGCTTGCCAATTACTGGCCCAAAAGAATGATGGGATCATTTT GGTAGGTTTGGCTGGTCCTTCTGGGGCTGGTAAGACCATGTTCACTGAAAAGATAATCAATTTCATGCCCAGCGTTGCTGTCATATCTATGGACAATTAC AACGATGCCAGCCGGATTGTTGATGGAAATTTTGATGATCCCCGATTGACTGACTATGACACATTGCTTAAAAATGTTCAAGATCTAAAAGCTGGAAAAT CTGCCGAGGTACCAGTCTATGATTTCAAGTCTAGCTCCCGCACGGGATACAGAACAGTTGAAGTTCCAGAATCTCGCATTGTGATCATAGAAGGGATATA TGCCCTAAGTGAAAAGTTGCGCCCTTTGCTGGACTTGCGAATATCTGTTAGAGGGGGGATTCATTTTGATCTCGTTAAGCGTGTTTTACGAGATATTCAA CGTGCTGGACAGGAACCGGAAGAAATAATCCACCAGATATCTGAGACGGTATACCCAATGTATAAAGCCTTCATAGAGCCAGATCTTCAAACTGCTCACA TAAAAATTATAAACAAGTTCAACCCATTTACCGGATTCCAGAATCCGACTTACATCTTGAAGGTTGGTCTTGTTGGCGATATCATTTTATTTGGATCTCT GTATCCCTTTGCAATCCTGACCTTGTTGATGCTGCTTTGGCTTTTAGATGATTTCTTTGATTGGCCCTCAGCAAGAAACGTGGCTGTAGATAAAATCAAG GCTGTCTTGTCTGAAGGACACACCGAGACGGAGGAGCAAACTTATGACATATATCTTCTGCCACCTGGCGAAGATCCAGAGTCTTGCCAATCATATCTGA GGATGCGCAACAAAGAAGGGAAATACAATCTCATGTTTGAGGAATGGGTGACTGATGCACCATTCGTTATTTCTCCGAGGATCACGTTCGAAGTTAGCGT CCGTCTTCTTGGTGGGTTGATGGCTTTGGGGTATACGATTGCAACCATCCTTAAAAGGAGTAGCCATGTGTTCTTCAATGACAAAGTATGTGTCAAAGTT GATTGGCTAGAACAACTGAATCGTCAGTATATTCAGGTGCAAGGAAGAGATCGACTGGCTGTGAGATGTGTTGCAGAGCAACTAGGTTTGGAAGGGTCAT ATATTCCCCGCACATATATCGAACAAATCCAACTGGAGAAGCTTGTGGATGAAGTGATGGCTTTGCCTGATGATTTGAAGAATAAGCTTAGCCTAGATGA GGACTTAGTGTCTAGCCCCAGAGAAGCACTTCTTCGAGCATCTGCCGATAGGGTTGCAATGAGAAACAAGAACCTCAGTGGCATGTCACATTCATATTCG ACTCAAGGAGACAAGAGCTACTCCAAGCTCGCTGCATTCTCGAATGGAAACCGGAGGTACGAGGACCGAAATTCAGAGCCTCAAGCAATGCTGGCAAACC AGGGAGTGATAACTCAGCTTTCGGAACAGATGACATCACTAAACGATAGAATGGATGATTTTACATCCCAGCTAGAAGAACTGAACACCAAGCTAACCGT GATGAACAATTCTCCACGTCAGCAGAACATCGGCGCGCAAGGAGAGTCGAGCAACGGCTCTGCTCCTACATCGTACTTCGTGTCCGGCTTAAGCAACGGT TCCCTGACCGGATCAAAACAACAACTGCCTCATTCGTCCTCGTTTTCCCAGTTAGCCAAGGATTCACCTCTACTGGAAGAGATCGTACGAGGACAACGCC AAATCATGCACAAGCTGGACAGTTTCACCAGCCTCCTGCATGAGGCGACAGCAGAGAGGTCCAAGCAAGCTAGGAAAGGAAACAAGCTAACGGTGGCTGA CATGAACACCATTGGAGTTCCTCTGGTTTTGTCCATGGCGATTGGTGGGTTAGGGCTGTTGCTGTTTAGGAGCTTTCGTAACAGCAGATAA
AA sequence Show only first row Show all	>Lus10030919 pacid=23155252 polypeptide=Lus10030919 locus=Lus10030919.g ID=Lus10030919.BGIv1.0 annot-version=v1.0 MGEDASGSESHPKKQGLLKDQVRLAKRKDSDRYKIVPIQESLSFEKGFFVVIRACQLLAQKNDGIILVGLAGPSGAGKTMFTEKIINFMPSVAVISMDNY NDASRIVDGNFDDPRLTDYDTLLKNVQDLKAGKSAEVPVYDFKSSSRTGYRTVEVPESRIVIIEGIYALSEKLRPLLDLRISVRGGIHFDLVKRVLRDIQ RAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKVGLVGDIILFGSLYPFAILTLLMLLWLLDDFFDWPSARNVAVDKIK AVLSEGHTETEEQTYDIYLLPPGEDPESCQSYLRMRNKEGKYNLMFEEWVTDAPFVISPRITFEVSVRLLGGLMALGYTIATILKRSSHVFFNDKVCVKV DWLEQLNRQYIQVQGRDRLAVRCVAEQLGLEGSYIPRTYIEQIQLEKLVDEVMALPDDLKNKLSLDEDLVSSPREALLRASADRVAMRNKNLSGMSHSYS TQGDKSYSKLAAFSNGNRRYEDRNSEPQAMLANQGVITQLSEQMTSLNDRMDDFTSQLEELNTKLTVMNNSPRQQNIGAQGESSNGSAPTSYFVSGLSNG SLTGSKQQLPHSSSFSQLAKDSPLLEEIVRGQRQIMHKLDSFTSLLHEATAERSKQARKGNKLTVADMNTIGVPLVLSMAIGGLGLLLFRSFRNSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26190			Phosphoribulokinase / Uridine ...		Lus10030919 [exp]	0	1
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Lus10041433 [exp]	5.3	0.8890
AT1G04300			TRAF-like superfamily protein ...		Lus10021216 [exp]	7.1	0.8776
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10033533 [exp]	7.1	0.8930
AT1G27900			RNA helicase family protein (....		Lus10015812 [exp]	7.3	0.8900
AT1G04300			TRAF-like superfamily protein ...		Lus10022207 [exp]	7.3	0.8898
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10019024 [exp]	8.0	0.8598
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10003795 [exp]	10.0	0.8544
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001440 [exp]	11.0	0.8773
AT2G39260			binding;RNA binding (.1)		Lus10023481 [exp]	13.9	0.8100
AT5G50950		FUM2	FUMARASE 2 (.1.2.3)		Lus10032296 [exp]	14.0	0.8758

Compare expression of checked genes

Lus10030919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.