Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13570 180 / 7e-52 F-box/RNI-like superfamily protein (.1) AT3G26922 71 / 1e-13 F-box/RNI-like superfamily protein (.1) AT1G67390 71 / 5e-13 F-box family protein (.1) AT5G22730 69 / 1e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G56420 69 / 2e-12 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT1G51370 69 / 2e-12 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3) AT5G53840 65 / 4e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G10400 65 / 4e-11 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT1G60400 64 / 5e-11 F-box/RNI-like superfamily protein (.1) AT1G78760 63 / 1e-10 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030569 [exp] 827 / 0 AT1G13570 183 / 5e-53 F-box/RNI-like superfamily protein (.1) Lus10019144 [exp] 185 / 1e-53 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1) Lus10034414 [exp] 182 / 2e-52 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10034415 [exp] 137 / 5e-37 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10041818 [exp] 119 / 2e-29 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1) Lus10004852 [exp] 114 / 4e-27 AT1G13570 147 / 6e-39 F-box/RNI-like superfamily protein (.1) Lus10004851 [exp] 112 / 7e-27 AT1G13570 139 / 7e-37 F-box/RNI-like superfamily protein (.1) Lus10006346 [exp] 109 / 5e-26 AT1G13570 140 / 2e-37 F-box/RNI-like superfamily protein (.1) Lus10040760 [exp] 109 / 6e-26 AT1G13570 157 / 3e-43 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G039700 [exp] 203 / 1e-60 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.010G134200 [exp] 199 / 4e-59 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 199 / 9e-59 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.008G110400 [exp] 164 / 1e-45 AT1G13570 419 / 2e-144 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 157 / 3e-43 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.004G034500 [exp] 76 / 2e-14 AT1G61330 175 / 3e-49 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G098700 [exp] 72 / 2e-13 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.011G042900 [exp] 69 / 2e-12 AT1G61330 226 / 2e-68 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G104100 [exp] 63 / 2e-10 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.013G146800 [exp] 61 / 1e-09 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10030920 pacid=23155224 polypeptide=Lus10030920 locus=Lus10030920.g ID=Lus10030920.BGIv1.0 annot-version=v1.0 ATGGATCCTTCCGGTATAGTGGATCCTAGTTCGACATTAGATAGGCTAAGCACTCTTCCAGGCAATGTGATCGACAACATTCTATCGTGTCTATCGATAA AAGAAGCTGCAAGGACGAGTTGCTTATCCAAACACTGGAAGGAAAAATGGCACACTGTCCCATACGTTATCCTCGCAGAAAAAATGCTGAGCGAAAGAAT GCAATCTCAGATCGAAGGCATCGTAACTTACATTCTCACCAAACACGCTGGAGACCTCGAGACATTCTCGCTCTCAGTCAACACGGTGAAGTTCTTCTAC GACATGAAAGCGTGGATGTGGAGGCTATCTCGGAAATCAATCCAAGACCTCACCATTAAGGTCCACAGAGGGGCACGCCACGACGTCCCTGTGGACTTGT TCTTCTGCGAGCAGCTGAAGAAGTTAACCCTTCGTTATTTCCAGTTCAGACCTCCGAGCAGCTTTAGAGGGTTCCAGAATCTCACGAGCCTCGATCTTAA GAAAGTGACCATATCAAAAGAAGCGCTTGAGAGTTTGTTAGCGAGCTGCCCGAATCTCGAGACGTTGGTTCTCAAGAGGCTGAGCTGCGTTGATCATCTC CATGTCAACGCTTCGAACCTCAAGTACTTGGACTTTGGCGGAGAATTCAAATCCATGTGCTTCAATGCTCCGTTTATCTCTGTCTTGGCTATAAACATGT ACTGGATTGGGTCAGAGGTGAACAACTTCGACTTGAGGTTCATAATCCGCGGCCTGCCTCCCGCTATCGGGGAGCTTAGAGTGTTGTGTCCTTTTAAGAC GTTCTTGCCTGCAGGAAATCGGCTTGCTCAGCTCTCAACTTCTTACAACAACTTAGGAACGTTCGTATTGGACAATTTCTGTTTCAAAAAGGTGGACGAG GTCTCGTGTCTTCTTTCGATGACTAGATGCTTCCCTAACCTGCATTCTCTCGAGATTCAGGCATGTAGCTGCGATAACGAAGCAGCGCAAGTTGCGGTTT TGGCGTTCTGGGAAGAAGACAAGCAGCCGACTTGCTCGTTCGACCGGCTGCGTAAGGCCAGGGTGAGGTCGTTCCACGGGGAAGATCCCGAAATGAGGTT TATCAAGTTTGTATTGGCGAATTCGCCCGAGCTGGTAGAGATGAGTGTGGAGCCCACTTCTATCCCTGACTACGACGAAACGGTAATAACTGCTCAACTG ACGGATTTGCCTCGAGCCTCAGAGAAAGCCAAAGTGAACTATGTTCCGTACAACCCTGACCCTGATCCGGAAGATTTCTCGGAGGATGATGGTAACAGCT CAGACGATTCGTACTCCTCAGATAGCGATTAA
AA sequence Show only first row Show all	>Lus10030920 pacid=23155224 polypeptide=Lus10030920 locus=Lus10030920.g ID=Lus10030920.BGIv1.0 annot-version=v1.0 MDPSGIVDPSSTLDRLSTLPGNVIDNILSCLSIKEAARTSCLSKHWKEKWHTVPYVILAEKMLSERMQSQIEGIVTYILTKHAGDLETFSLSVNTVKFFY DMKAWMWRLSRKSIQDLTIKVHRGARHDVPVDLFFCEQLKKLTLRYFQFRPPSSFRGFQNLTSLDLKKVTISKEALESLLASCPNLETLVLKRLSCVDHL HVNASNLKYLDFGGEFKSMCFNAPFISVLAINMYWIGSEVNNFDLRFIIRGLPPAIGELRVLCPFKTFLPAGNRLAQLSTSYNNLGTFVLDNFCFKKVDE VSCLLSMTRCFPNLHSLEIQACSCDNEAAQVAVLAFWEEDKQPTCSFDRLRKARVRSFHGEDPEMRFIKFVLANSPELVEMSVEPTSIPDYDETVITAQL TDLPRASEKAKVNYVPYNPDPDPEDFSEDDGNSSDDSYSSDSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13570			F-box/RNI-like superfamily pro...		Lus10030920 [exp]	0	1
AT2G06005		FIP1	FRIGIDA interacting protein 1 ...		Lus10017167 [exp]	1.0	0.9510
AT2G24550			unknown protein		Lus10020142 [exp]	2.4	0.9471
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10019288 [exp]	2.8	0.9305
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10019189 [exp]	3.5	0.9354
AT1G20460			unknown protein		Lus10012282 [exp]	4.6	0.9413
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004551 [exp]	4.6	0.9306
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Lus10013401 [exp]	7.7	0.9313
AT3G29270			RING/U-box superfamily protein...		Lus10005220 [exp]	8.1	0.9307
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Lus10013117 [exp]	9.8	0.9241
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10010442 [exp]	12.6	0.8667

Compare expression of checked genes

Lus10030920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.