Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10870 609 / 0 AGD4 ARF-GAP domain 4 (.1) AT1G60860 423 / 2e-137 AGD2 ARF-GAP domain 2 (.1) AT5G61980 420 / 1e-135 AGD1 ARF-GAP domain 1 (.1) AT5G13300 348 / 3e-108 AGD3, VAN3, SFC ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) AT5G54310 89 / 2e-18 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G17660 85 / 2e-18 AGD15 ARF-GAP domain 15 (.1) AT4G05330 77 / 6e-15 AGD13 ARF-GAP domain 13 (.1) AT3G07940 76 / 2e-14 Calcium-dependent ARF-type GTPase activating protein family (.1) AT4G21160 74 / 8e-14 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT2G37550 71 / 2e-12 ASP1, AGD7 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030568 [exp] 1336 / 0 AT1G60860 925 / 0.0 ARF-GAP domain 2 (.1) Lus10001799 [exp] 410 / 3e-132 AT5G13300 1201 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Lus10002572 [exp] 381 / 5e-121 AT5G13300 1149 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Lus10016724 [exp] 299 / 3e-90 AT5G61980 1060 / 0.0 ARF-GAP domain 1 (.1) Lus10036018 [exp] 278 / 2e-82 AT5G61980 1009 / 0.0 ARF-GAP domain 1 (.1) Lus10027249 [exp] 88 / 4e-19 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10038582 [exp] 89 / 3e-18 AT5G54310 508 / 2e-178 NEVERSHED, ARF-GAP domain 5 (.1) Lus10011238 [exp] 88 / 5e-18 AT5G54310 261 / 5e-82 NEVERSHED, ARF-GAP domain 5 (.1) Lus10018445 [exp] 88 / 5e-18 AT5G54310 265 / 2e-83 NEVERSHED, ARF-GAP domain 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G066800 [exp] 358 / 8e-112 AT5G13300 1192 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Potri.003G163200 [exp] 352 / 9e-110 AT5G13300 1146 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Potri.015G105500 [exp] 332 / 3e-102 AT5G61980 1110 / 0.0 ARF-GAP domain 1 (.1) Potri.011G127000 [exp] 93 / 2e-19 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G406300 [exp] 93 / 2e-19 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G044100 [exp] 91 / 4e-19 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.012G036900 [exp] 86 / 2e-18 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.004G035800 [exp] 87 / 7e-18 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G372000 [exp] 78 / 3e-15 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.011G098500 [exp] 76 / 2e-14 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0145 [flax] [poplar] Golgi-transport PF03114 [flax] [poplar] BAR BAR domain CL0145 [flax] [poplar] PF01412 [flax] [poplar] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Lus10030921 pacid=23155236 polypeptide=Lus10030921 locus=Lus10030921.g ID=Lus10030921.BGIv1.0 annot-version=v1.0 ATGGCGGCTTTCGTTAATCTGGACGATTCTCCGATGTTCCAGAAAGAGATAGCAGCTATAGGGAAGATGGCAGATGAGTTGAAGGAACGCTGCCAAAGGC TTTTTAACGGGTCTCAGAAATTTTTGACAGCTATTGGAGAGGCATGCAATGCAGACACAGTACTAGCTGATTCACTAGAAGCATTTGGAGGAGGACAAGA TGATCCAATCAGTGTATCCATAGGAGGCCCTGTCATGTCCATGTTCGTTAATTCACTTCGCGAGCTAGCGTCCTATAAGGAGCTCCTTCGTTCTCAAGTA GAGCATGTGCTAGTAGATCGTTTGACACAGTTTGTGGATGTTGATTTGCAAGATGCACTGGAGTCTCGGAAGCGACTGGACAAAGCAGTGTATGCTTATG ATCAGTCACGGGATAAGTATGTATCTTTAAAGAAAAATGCCCGTGGAGACATAGTTGAAGAATTGGAAGAGAATCTACAGAACTCAAAGTCTGCATACGA GAGAAGCCGCTTTAATCTAGTTAGTGGCCTCATGAATATTGAAGCTAAGAAGAAATACGAATTCTTGGAATCAATGAGTGCAGTTATGGATGCCCATCTG AGATACTTTAAGCAGGGATATGAGTTGTTCCGTCAAATGGAGCCATTTGTTCACCAGGTACTGACATATGCTCAACAATCAAAAGAACATGCTAGTATTG AGCAAGATAAACTTGCCAAGAGGATCCAGGAATTTAGGACCCAATCTGAGTTAGACAGCATACAAGCTTCAAGTAATTTAGAACCTTCAACAAGTGGTGA GAGTTTTGCTGGTCATGGCATGAGCTCCTACAAAAATATAGAAGGAATCGTGCAATCTTCCTCAAATGGAGAGGTTCAGATTCTCAAACAAGGGTATCTA CTAAAACGTTCCTCTAGCTCAAGAGGAGACTGGAAGAGAAGGGTGTTCAACATCGTTCAACTGCCTCAGCAGATTAAATACGGACTTACGACTTTGCTTC AGGATAATCTCTCCATCAAAAACTTTCACACTGCAGCAGATAGGATGGATTGGGTAAAAAAAATCAGTGGAGCAATTGCTTCACTCCTTAACTTTCAGCT CTTCCGACAGTCCAATTCAGGGAAAAGAACTCTCGAAGCCAAAGAAGCTGCTGCTTCTCATAAATCTCAAGAACTAGAAAATTATCAAAATTCTGAAGAT GATTCAGTTTCTGGAATCCTAAGAGAAATTCCAGGAAATGAGCTTTGTGCTGAATGCAGTGCTCACGAACCTGATTGGGCATCTCTTAATCTTGGCATAT TATTATGCATCGAGTGCTCTGGTGTTCACCGAAACCTTGGCGTTCATATTTCAAAGGCTCAAGATAGAAAACATGCGGAAACTTGTGGAATCTCTTTCAC TTTTGTGCGGTCATTAACCTTCGATGTCAAGGTTTGGGAGCCAACAGTCTTAGACTTATTCCGTGCACTGGGAAACACCTATAGTAACTCTTTGTGGGAA GGACTGCTGCTTCTTGAAAATAGGAGGATAAAAGAATCCAACGTCACCATATCAGTTACTAAACCCGGACCCAAAGATTCCATCTACTCTAAGGAGATGT ATATTCATGCCAAGTATGTTGAAAAGGCTCTAGTTGTTAGAGACGCAACAGAATCCAGCTCTCTACCGAACAACAGAACCATCTGGCTAGCTGTGAAGAC GAACAATCTACGAGAAGTATATCGATGCATTGTGATTTCCGACAAAAACATTGTCAACACCATATTCGACGAGATTGCTCCAGTCGATCTACACCACCAG ATAAACGATCCAGAGGATCATACATCCGACTCCTCTGCAATAGACAAAATATTCTGTGATCCGGAATCATGCCAGCGAATCAAAGATTCCAATGATCCAA GGAACTGTTTCCAAGGCTGCTCGTTACTCCACCTGGCATGTTACTATGGTAACATAGTCATGCTCGAATTGCTGCTGCAGTTCGGTGCTGATATAAACTG GAGGGACTTCCATGGGAGGACTCCCTTGCACCATTGCATTGCCAAAGGGGATTATCCATTGGCCAAGTTCCTACTCAGAAGAGGAGCGTCACCGGCGGTG AAAGATGGCCGGGGTCTAAGTGTGCTGGAAAGGGCAATGGAGATTGGTGCAATATCTGATGAGGAACTATTCATATTGCTAGCTGAAACTTAG
AA sequence Show only first row Show all	>Lus10030921 pacid=23155236 polypeptide=Lus10030921 locus=Lus10030921.g ID=Lus10030921.BGIv1.0 annot-version=v1.0 MAAFVNLDDSPMFQKEIAAIGKMADELKERCQRLFNGSQKFLTAIGEACNADTVLADSLEAFGGGQDDPISVSIGGPVMSMFVNSLRELASYKELLRSQV EHVLVDRLTQFVDVDLQDALESRKRLDKAVYAYDQSRDKYVSLKKNARGDIVEELEENLQNSKSAYERSRFNLVSGLMNIEAKKKYEFLESMSAVMDAHL RYFKQGYELFRQMEPFVHQVLTYAQQSKEHASIEQDKLAKRIQEFRTQSELDSIQASSNLEPSTSGESFAGHGMSSYKNIEGIVQSSSNGEVQILKQGYL LKRSSSSRGDWKRRVFNIVQLPQQIKYGLTTLLQDNLSIKNFHTAADRMDWVKKISGAIASLLNFQLFRQSNSGKRTLEAKEAAASHKSQELENYQNSED DSVSGILREIPGNELCAECSAHEPDWASLNLGILLCIECSGVHRNLGVHISKAQDRKHAETCGISFTFVRSLTFDVKVWEPTVLDLFRALGNTYSNSLWE GLLLLENRRIKESNVTISVTKPGPKDSIYSKEMYIHAKYVEKALVVRDATESSSLPNNRTIWLAVKTNNLREVYRCIVISDKNIVNTIFDEIAPVDLHHQ INDPEDHTSDSSAIDKIFCDPESCQRIKDSNDPRNCFQGCSLLHLACYYGNIVMLELLLQFGADINWRDFHGRTPLHHCIAKGDYPLAKFLLRRGASPAV KDGRGLSVLERAMEIGAISDEELFILLAET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60860		AGD2	ARF-GAP domain 2 (.1)		Lus10030921 [exp]	0	1
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Lus10023270 [exp]	3.6	0.8168
AT1G77680			Ribonuclease II/R family prote...		Lus10014833 [exp]	9.5	0.8008
AT1G78540		STATLB, ATSHB	STAT-TYPE LINKER-SH2 DOMAIN FA...		Lus10013716 [exp]	11.8	0.7971
AT1G77580			Plant protein of unknown funct...		Lus10000186 [exp]	14.1	0.8021
AT4G39050			Kinesin motor family protein (...		Lus10041958 [exp]	14.8	0.8041
AT1G57600			MBOAT (membrane bound O-acyl t...		Lus10007951 [exp]	18.6	0.7769
AT1G50710			unknown protein		Lus10032639 [exp]	23.0	0.7982
AT5G24680			Peptidase C78, ubiquitin fold ...		Lus10032907 [exp]	23.2	0.7195
AT4G39050			Kinesin motor family protein (...		Lus10028790 [exp]	25.7	0.7850
AT5G10630			Translation elongation factor ...		Lus10020153 [exp]	26.1	0.7661

Compare expression of checked genes

Lus10030921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.