Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13870 485 / 5e-175 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) AT2G06850 469 / 1e-168 XTH4, EXT, EXGT-A1 endoxyloglucan transferase A1, xyloglucan endotransglucosylase/hydrolase 4 (.1) AT3G23730 310 / 5e-106 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT5G65730 308 / 3e-105 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1) AT4G14130 306 / 1e-104 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT4G03210 299 / 1e-101 XTH9, EXGT-A6, XTR16 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) AT5G57550 295 / 4e-100 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT4G37800 292 / 8e-99 XTH7, XTR15 xyloglucan endotransglucosylase/hydrolase 7 (.1) AT5G57560 290 / 4e-98 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT4G30270 283 / 8e-96 XTH24, SEN4, BRU1, MERI-5, MERI5B SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040121 [exp] 586 / 0 AT5G13870 493 / 5e-178 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10011052 [exp] 519 / 0 AT5G13870 507 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10003022 [exp] 518 / 0 AT5G13870 506 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10039715 [exp] 319 / 3e-109 AT4G03210 441 / 1e-157 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10018503 [exp] 317 / 2e-108 AT4G03210 439 / 9e-157 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10011597 [exp] 305 / 6e-104 AT5G65730 469 / 7e-169 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10039643 [exp] 304 / 1e-103 AT5G65730 469 / 1e-168 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10031586 [exp] 304 / 2e-103 AT4G03210 446 / 9e-160 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10010938 [exp] 302 / 5e-103 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G071000 [exp] 520 / 0 AT5G13870 504 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.003G159700 [exp] 519 / 0 AT5G13870 500 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.014G140300 [exp] 490 / 5e-177 AT5G13870 527 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.002G060500 [exp] 313 / 3e-107 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060400 [exp] 313 / 4e-107 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.007G008500 [exp] 311 / 1e-106 AT5G65730 472 / 6e-170 xyloglucan endotransglucosylase/hydrolase 6 (.1) Potri.005G201200 [exp] 310 / 9e-106 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201250 [exp] 310 / 9e-106 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.014G146100 [exp] 307 / 6e-105 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.002G236200 [exp] 306 / 2e-104 AT3G23730 436 / 1e-155 xyloglucan endotransglucosylase/hydrolase 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10030923 pacid=23166846 polypeptide=Lus10030923 locus=Lus10030923.g ID=Lus10030923.BGIv1.0 annot-version=v1.0 ATGGCTACGAGGAACATGGTCATGGTGCTGATGATGGCCATGCTGCTGTGTGGAACAACAATGGCGCTCGCCCCAAGGAAACCAGTCCCAGTCCCATTTG GCAGGAACTACGCCCCTACTTGGGCTTTCGACCACATCAAGTACTTCAACGGCGGCTCCGAGATTCAGCTCCACTTGGACAAATACACCGGGACTGGATT CCAATCAAAGGGTTCATACTTGTTCGGACACTTCAGTATGCAGATGAAGTTGGTCCCCGGCGATTCTGCCGGAACCGTTACTGCTTTCTACCTATCATCG CAAAACTCGGAGCATGACGAGATAGATTTCGAGTTCTTGGGGAACAGATCAGGGCAGCCTTACATTCTTCAGACAAACGTGTTCACGGGCGGGAAAGGTG ACAGGGAACAGAGGATATACCTCTGGTTCGACCCAACCAAAGCTTACCATTCCTACTCCGTCCTCTGGACCTCCAACATCATTGCGTTCTTTGTGGACGA CGTGCCAATCAGAGTGTTCAAGAACCTCAAGAACATGGGAGTGAAGTTCCCATTCGAGCAGCCAATGAAGATATACTCCAGTCTATGGAACGCCGACGAC TGGGCCACCAGGGGAGGTTTGGAGAAGACCGATTGGTCCAAGGCTCCATTCATCGCGTCCTACAGGGAGTTCCACGTGGACGGCTGCGAGGCGTCGGTGC AGGCTAAGTTCTGTGCGACCCAGGGGAAGAGATGGTGGGACCAGAAGGAGTTCCAGGACCTTGACGCTTATCAGTACCGTAGGCTGAAGTGGGTCCGCCA GAGGTTCACCATTTACAACTACTGTACCGACCGGGTCCGGTACCCTTCGCTGCCCGCCGAGTGCAGGCCTGACCGTGATATTTAA
AA sequence Show only first row Show all	>Lus10030923 pacid=23166846 polypeptide=Lus10030923 locus=Lus10030923.g ID=Lus10030923.BGIv1.0 annot-version=v1.0 MATRNMVMVLMMAMLLCGTTMALAPRKPVPVPFGRNYAPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSS QNSEHDEIDFEFLGNRSGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHSYSVLWTSNIIAFFVDDVPIRVFKNLKNMGVKFPFEQPMKIYSSLWNADD WATRGGLEKTDWSKAPFIASYREFHVDGCEASVQAKFCATQGKRWWDQKEFQDLDAYQYRRLKWVRQRFTIYNYCTDRVRYPSLPAECRPDRDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10030923 [exp]	0	1
AT1G18400	bHLH	bHLH044, BEE1	BR enhanced expression 1 (.1)		Lus10033562 [exp]	11.2	0.9908
AT5G46930			Plant invertase/pectin methyle...		Lus10040119 [exp]	13.2	0.9536
AT2G10940			Bifunctional inhibitor/lipid-t...		Lus10027704 [exp]	13.3	0.9528
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Lus10012670 [exp]	13.4	0.9506
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10017708 [exp]	14.2	0.9406
AT1G18400	bHLH	bHLH044, BEE1	BR enhanced expression 1 (.1)		Lus10017602 [exp]	15.5	0.9840
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10011817 [exp]	16.1	0.9889
AT4G24510		VC2, VC-2, CER2	ECERIFERUM 2, HXXXD-type acyl-...		Lus10028171 [exp]	18.1	0.9651
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10026134 [exp]	19.4	0.9460
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10004556 [exp]	20.1	0.9887

Compare expression of checked genes

Lus10030923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.